MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:620.8 nTPM
HPA Brain:717.7 nTPM
GTEx:620.8 nTPM
FANTOM5:178.4 Scaled Tags Per Million
Pig:830.0 nTPM
Mouse:233.3 nTPM
Allen mouse:21.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 717.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 365.7
2411 Female, age 72, unknown 605.1
2219 Male, age 76, both hemispheres 490.2
2666 Male, age 74, left hemisphere 473.0
1827 Male, age 72, unknown 433.5
2828 Female, age 72, unknown 355.3
2019 Male, age 18, unknown 337.9
1870 Female, age 42, unknown 309.6
1833 Male, age 53, unknown 290.7
1830 Male, age 51, unknown 254.2
2586 Male, age 75, left hemisphere 107.1
Dorsal raphe nucleus
nTPM: 565.3
2298 Female, age 72, unknown 872.6
2750 Male, age 76, both hemispheres 612.0
2047 Male, age 72, unknown 607.4
1828 Male, age 53, unknown 470.9
2016 Female, age 72, unknown 263.7
Inferior colliculus
nTPM: 266.0
2097 Female, age 72, unknown 354.3
1848 Female, age 42, unknown 266.5
1890 Male, age 53, unknown 243.3
2849 Male, age 72, unknown 200.0
Median raphe nucleus
nTPM: 717.7
2220 Male, age 76, midline 717.7
Periaquaductal grey, anterior
nTPM: 349.0
1795 Male, age 51, unknown 488.8
1947 Male, age 18, unknown 409.7
2502 Female, age 75, unknown 148.6
Periaquaductal grey, dorsal
nTPM: 289.1
1840 Male, age 53, unknown 304.6
2850 Male, age 76, both hemispheres 292.2
2464 Female, age 72, unknown 290.6
1831 Male, age 72, unknown 269.0
Periaquaductal grey, lateral
nTPM: 345.1
2272 Male, age 74, both hemispheres 523.6
2053 Male, age 18, unknown 264.1
2140 Male, age 76, both hemispheres 247.5
Pretectal area
nTPM: 434.5
1944 Female, age 72, unknown 580.9
2224 Female, age 72, unknown 576.3
2007 Male, age 72, unknown 535.6
1816 Male, age 51, unknown 534.7
1817 Female, age 42, unknown 481.4
2273 Male, age 74, both hemispheres 470.0
2667 Female, age 75, unknown 452.0
1815 Male, age 53, unknown 393.3
2825 Male, age 18, unknown 299.5
2407 Male, age 75, both hemispheres 248.3
2316 Male, age 76, right hemisphere 207.9
Red nucleus
nTPM: 279.2
2584 Male, age 75, left hemisphere 407.3
1821 Female, age 72, unknown 347.2
1954 Female, age 42, unknown 313.6
2785 Male, age 18, unknown 310.4
2823 Male, age 76, right hemisphere 279.5
2503 Female, age 72, unknown 272.5
1904 Male, age 53, unknown 268.3
2227 Male, age 72, unknown 260.0
2769 Male, age 72, unknown 257.7
2588 Male, age 74, left hemisphere 242.7
1865 Male, age 51, unknown 229.4
2725 Female, age 75, unknown 162.2
Substantia nigra
nTPM: 574.5
1916 Female, age 42, unknown 1060.6
2241 Male, age 72, unknown 718.2
1851 Male, age 51, unknown 672.8
1941 Male, age 53, unknown 666.5
2409 Female, age 72, unknown 623.8
1889 Female, age 72, unknown 508.2
2699 Male, age 18, unknown 437.4
2590 Female, age 75, unknown 412.0
2665 Male, age 74, both hemispheres 348.1
2583 Male, age 75, right hemisphere 297.2
Superior colliculus
nTPM: 375.9
2668 Female, age 75, unknown 1210.8
2087 Female, age 72, unknown 496.2
1796 Male, age 53, unknown 425.4
2261 Male, age 18, unknown 399.6
1895 Male, age 76, right hemisphere 301.0
1839 Male, age 51, unknown 238.6
1913 Female, age 42, unknown 224.5
2587 Male, age 74, left hemisphere 222.8
1995 Male, age 72, unknown 174.1
2664 Male, age 75, both hemispheres 65.9
Ventral tegmental area
nTPM: 590.2
2410 Female, age 72, unknown 830.7
2218 Male, age 76, both hemispheres 824.4
1915 Female, age 42, unknown 677.0
2021 Male, age 53, unknown 429.0
1942 Male, age 51, unknown 416.7
2223 Female, age 72, unknown 363.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 620.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 620.8
Samples: 183

Max nTPM: 3210.8
Min nTPM: 67.8
Std nTPM: 611.8
Median nTPM: 355.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 3210.8
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 3202.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 2851.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 2701.4
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 2565.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 2175.2
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 1977.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 1970.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 1940.5
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 1907.4
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 1752.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 178.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 178.4
FF:10158-103A5 76 years, female 178.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 830.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 830.0
Samples: 4

Max nTPM: 1411.1
Min nTPM: 260.6
Sample A Female 1411.1
Sample B Female 534.4
Sample C Male 1114.0
Sample D Male 260.6
Midbrain
nTPM: 678.5
Samples: 4

Max nTPM: 1066.9
Min nTPM: 465.4
Sample A Female 658.0
Sample B Female 523.5
Sample C Male 1066.9
Sample D Male 465.4
Periaqueductal gray
nTPM: 454.6
Samples: 3

Max nTPM: 650.3
Min nTPM: 348.2
Sample B Female 365.2
Sample C Male 650.3
Sample D Male 348.2
Superior colliculi
nTPM: 642.0
Samples: 4

Max nTPM: 1178.4
Min nTPM: 357.6
Sample A Female 542.5
Sample B Female 357.6
Sample C Male 1178.4
Sample D Male 489.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 233.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 233.3
Samples: 4

Max nTPM: 302.1
Min nTPM: 161.6
Sample A Male 302.1
Sample B Male 209.4
Sample C Female 161.6
Sample D Female 260.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 21.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 21.5
79556674 Antisense, RP_071204_01_C07, Mouse strain C57BL/6J (56 days, male) 25.3
79632309 Antisense, RP_071204_01_C07, Mouse strain C57BL/6J (56 days, male) 21.6
1089 Antisense, RP_Baylor_253988, Mouse strain C57BL/6J (56 days, male) 17.6
1088 Antisense, RP_Baylor_253988, Mouse strain C57BL/6J (56 days, male) 14.3

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