MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:25.9 nTPM
HPA Brain:103.7 nTPM
GTEx:25.9 nTPM
FANTOM5:87.1 Scaled Tags Per Million
Pig:65.3 nTPM
Mouse:61.3 nTPM
Allen mouse:7.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 103.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.7
2411 Female, age 72, unknown 57.4
1870 Female, age 42, unknown 48.8
2019 Male, age 18, unknown 47.2
2219 Male, age 76, both hemispheres 46.6
1833 Male, age 53, unknown 42.6
1830 Male, age 51, unknown 41.6
2666 Male, age 74, left hemisphere 41.1
1827 Male, age 72, unknown 38.4
2828 Female, age 72, unknown 37.7
2586 Male, age 75, left hemisphere 35.2
Dorsal raphe nucleus
nTPM: 65.7
2047 Male, age 72, unknown 91.1
2750 Male, age 76, both hemispheres 89.5
2298 Female, age 72, unknown 71.9
1828 Male, age 53, unknown 42.4
2016 Female, age 72, unknown 33.9
Inferior colliculus
nTPM: 35.6
2097 Female, age 72, unknown 37.4
1848 Female, age 42, unknown 37.3
1890 Male, age 53, unknown 37.1
2849 Male, age 72, unknown 30.8
Median raphe nucleus
nTPM: 103.7
2220 Male, age 76, midline 103.7
Periaquaductal grey, anterior
nTPM: 52.5
2502 Female, age 75, unknown 73.4
1947 Male, age 18, unknown 42.1
1795 Male, age 51, unknown 42.0
Periaquaductal grey, dorsal
nTPM: 42.6
2464 Female, age 72, unknown 54.0
2850 Male, age 76, both hemispheres 47.7
1840 Male, age 53, unknown 37.9
1831 Male, age 72, unknown 30.9
Periaquaductal grey, lateral
nTPM: 41.5
2053 Male, age 18, unknown 43.0
2140 Male, age 76, both hemispheres 41.5
2272 Male, age 74, both hemispheres 40.0
Pretectal area
nTPM: 41.1
2224 Female, age 72, unknown 48.6
2273 Male, age 74, both hemispheres 45.9
1815 Male, age 53, unknown 45.2
2316 Male, age 76, right hemisphere 44.0
1817 Female, age 42, unknown 43.3
2007 Male, age 72, unknown 39.8
1816 Male, age 51, unknown 38.8
2667 Female, age 75, unknown 37.9
2825 Male, age 18, unknown 37.5
1944 Female, age 72, unknown 37.4
2407 Male, age 75, both hemispheres 33.5
Red nucleus
nTPM: 45.8
1904 Male, age 53, unknown 59.5
2823 Male, age 76, right hemisphere 52.2
1865 Male, age 51, unknown 50.6
1821 Female, age 72, unknown 50.5
2503 Female, age 72, unknown 49.4
2227 Male, age 72, unknown 48.6
2769 Male, age 72, unknown 47.2
2785 Male, age 18, unknown 46.2
1954 Female, age 42, unknown 46.1
2725 Female, age 75, unknown 39.0
2588 Male, age 74, left hemisphere 33.1
2584 Male, age 75, left hemisphere 27.2
Substantia nigra
nTPM: 40.3
1851 Male, age 51, unknown 48.6
1941 Male, age 53, unknown 46.3
1916 Female, age 42, unknown 45.9
1889 Female, age 72, unknown 41.4
2241 Male, age 72, unknown 41.1
2699 Male, age 18, unknown 41.1
2409 Female, age 72, unknown 38.2
2590 Female, age 75, unknown 36.0
2665 Male, age 74, both hemispheres 35.6
2583 Male, age 75, right hemisphere 28.4
Superior colliculus
nTPM: 40.3
1913 Female, age 42, unknown 48.1
2587 Male, age 74, left hemisphere 44.1
1895 Male, age 76, right hemisphere 43.6
2261 Male, age 18, unknown 43.5
1796 Male, age 53, unknown 41.8
1995 Male, age 72, unknown 40.8
1839 Male, age 51, unknown 40.1
2668 Female, age 75, unknown 37.7
2087 Female, age 72, unknown 37.2
2664 Male, age 75, both hemispheres 26.5
Ventral tegmental area
nTPM: 50.9
2223 Female, age 72, unknown 59.4
2218 Male, age 76, both hemispheres 56.4
2410 Female, age 72, unknown 48.8
1915 Female, age 42, unknown 48.7
1942 Male, age 51, unknown 48.6
2021 Male, age 53, unknown 43.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 25.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.9
Samples: 183

Max nTPM: 56.5
Min nTPM: 16.7
Std nTPM: 5.3
Median nTPM: 25.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 56.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 43.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 42.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 41.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 40.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 38.4
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 36.7
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 36.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 35.1
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 34.8
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 34.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 87.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 87.1
FF:10158-103A5 76 years, female 87.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 65.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 60.7
Samples: 4

Max nTPM: 67.1
Min nTPM: 56.9
Sample A Female 67.1
Sample B Female 56.9
Sample C Male 57.6
Sample D Male 61.1
Midbrain
nTPM: 65.3
Samples: 4

Max nTPM: 92.6
Min nTPM: 50.9
Sample A Female 92.6
Sample B Female 65.6
Sample C Male 50.9
Sample D Male 52.0
Periaqueductal gray
nTPM: 62.1
Samples: 3

Max nTPM: 67.1
Min nTPM: 56.8
Sample B Female 62.3
Sample C Male 67.1
Sample D Male 56.8
Superior colliculi
nTPM: 58.8
Samples: 4

Max nTPM: 67.7
Min nTPM: 49.5
Sample A Female 67.7
Sample B Female 49.5
Sample C Male 57.6
Sample D Male 60.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 61.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 61.3
Samples: 4

Max nTPM: 62.9
Min nTPM: 60.1
Sample A Male 62.9
Sample B Male 61.2
Sample C Female 61.0
Sample D Female 60.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 7.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.2
68522380 Antisense, RP_050118_01_H11, Mouse strain C57BL/6J (56 days, male) 7.2

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