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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.2
nTPM
Monaco:
43.1
nTPM
Schmiedel:
63.9
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.2
HPA sample
nTPM
gdT-cell nTPM: 4.2
Samples: 6
Max nTPM: 9.1
Min nTPM: 2.7
P10809_1007
2.9
P10809_1022
2.9
P10809_1041
9.1
P10809_1060
4.2
P10809_1077
3.1
P10809_1098
2.7
MAIT T-cell nTPM: 3.3
Samples: 6
Max nTPM: 6.5
Min nTPM: 0.9
P10809_1006
2.7
P10809_1024
3.4
P10809_1043
3.1
P10809_1062
0.9
P10809_1083
6.5
P10809_1097
3.0
Memory CD4 T-cell nTPM: 2.7
Samples: 6
Max nTPM: 3.6
Min nTPM: 1.9
P10809_1014
1.9
P10809_1026
2.9
P10809_1045
3.6
P10809_1064
2.9
P10809_1086
2.1
P10809_1113
2.8
Memory CD8 T-cell nTPM: 3.6
Samples: 5
Max nTPM: 5.2
Min nTPM: 2.6
P10809_1012
3.3
P10809_1027
2.6
P10809_1046
5.2
P10809_1065
3.8
P10809_1111
3.1
Naive CD4 T-cell nTPM: 2.3
Samples: 6
Max nTPM: 4.2
Min nTPM: 1.2
P10809_1015
1.5
P10809_1030
1.9
P10809_1049
4.2
P10809_1068
3.6
P10809_1085
1.6
P10809_1112
1.2
Naive CD8 T-cell nTPM: 3.5
Samples: 6
Max nTPM: 4.5
Min nTPM: 2.2
P10809_1016
2.2
P10809_1031
4.1
P10809_1050
4.5
P10809_1069
3.7
P10809_1087
3.0
P10809_1110
3.6
T-reg nTPM: 2.7
Samples: 6
Max nTPM: 8.2
Min nTPM: 0.6
P10809_1018
2.6
P10809_1037
0.8
P10809_1056
8.2
P10809_1075
1.6
P10809_1094
0.6
P10809_1106
2.5
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
43.1
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 30.9
Samples: 4
Max nTPM: 50.8
Min nTPM: 12.6
RHH5202_R3573
18.4
RHH5230_R3602
41.7
RHH5259_R3631
50.8
RHH5288_R3660
12.6
Effector memory CD8 T-cell nTPM: 43.1
Samples: 4
Max nTPM: 55.2
Min nTPM: 34.5
RHH5203_R3574
42.1
RHH5231_R3603
40.7
RHH5260_R3632
55.2
RHH5289_R3661
34.5
MAIT T-cell nTPM: 30.7
Samples: 4
Max nTPM: 46.8
Min nTPM: 12.8
RHH5233_R3605
12.8
RHH5205_R3576
37.0
RHH5262_R3634
46.8
RHH5297_R3663
26.1
Memory CD4 T-cell TFH nTPM: 21.6
Samples: 4
Max nTPM: 28.5
Min nTPM: 16.1
RHH5300_R3666
28.5
RHH5236_R3608
21.9
RHH5265_R3637
16.1
RHH5208_R3579
19.8
Memory CD4 T-cell Th1 nTPM: 35.6
Samples: 4
Max nTPM: 43.4
Min nTPM: 26.6
RHH5210_R3581
26.6
RHH5302_R3668
30.0
RHH5238_R3610
43.4
RHH5267_R3639
42.4
Memory CD4 T-cell Th1/Th17 nTPM: 36.4
Samples: 4
Max nTPM: 54.5
Min nTPM: 18.4
RHH5303_R3669
18.4
RHH5211_R3582
37.8
RHH5239_R3611
35.0
RHH5268_R3640
54.5
Memory CD4 T-cell Th17 nTPM: 26.7
Samples: 4
Max nTPM: 46.3
Min nTPM: 10.8
RHH5304_R3670
22.0
RHH5212_R3583
27.5
RHH5240_R3612
10.8
RHH5269_R3641
46.3
Memory CD4 T-cell Th2 nTPM: 29.0
Samples: 4
Max nTPM: 48.2
Min nTPM: 14.5
RHH5305_R3671
25.9
RHH5213_R3584
27.2
RHH5241_R3613
14.5
RHH5270_R3642
48.2
Naive CD4 T-cell nTPM: 28.5
Samples: 4
Max nTPM: 32.1
Min nTPM: 25.3
RHH5306_R3672
29.4
RHH5214_R3585
27.1
RHH5242_R3614
25.3
RHH5271_R3643
32.1
Naive CD8 T-cell nTPM: 25.1
Samples: 4
Max nTPM: 32.2
Min nTPM: 16.9
RHH5201_R3572
16.9
RHH5229_R3601
27.7
RHH5258_R3630
32.2
RHH5287_R3659
23.5
Non-Vd2 gdTCR nTPM: 29.9
Samples: 4
Max nTPM: 44.2
Min nTPM: 20.2
RHH5235_R3607
44.2
RHH5264_R3636
24.2
RHH5207_R3578
20.2
RHH5299_R3665
30.9
T-reg nTPM: 28.2
Samples: 4
Max nTPM: 36.6
Min nTPM: 21.3
RHH5301_R3667
32.3
RHH5237_R3609
21.3
RHH5266_R3638
36.6
RHH5209_R3580
22.4
Terminal effector memory CD4 T-cell nTPM: 40.2
Samples: 2
Max nTPM: 52.5
Min nTPM: 27.8
RHH5243_R3615
52.5
RHH5272_R3644
27.8
Terminal effector memory CD8 T-cell nTPM: 31.7
Samples: 4
Max nTPM: 57.6
Min nTPM: 11.5
RHH5232_R3604
17.8
RHH5204_R3575
39.7
RHH5261_R3633
57.6
RHH5296_R3662
11.5
Vd2 gdTCR nTPM: 39.4
Samples: 4
Max nTPM: 43.9
Min nTPM: 30.8
RHH5234_R3606
41.8
RHH5206_R3577
41.2
RHH5263_R3635
43.9
RHH5298_R3664
30.8
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
