We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
17.3
nTPM
HPA Brain:
44.8
nTPM
GTEx:
17.3
nTPM
FANTOM5:
56.9
Scaled Tags Per Million
Pig:
21.5
nTPM
Mouse:
18.9
nTPM
Allen mouse:
0.3
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
44.8
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 36.9
1830
Male, age 51, unknown
46.7
1833
Male, age 53, unknown
42.0
2411
Female, age 72, unknown
40.8
2586
Male, age 75, left hemisphere
39.6
2019
Male, age 18, unknown
37.9
2666
Male, age 74, left hemisphere
36.9
1870
Female, age 42, unknown
36.0
2219
Male, age 76, both hemispheres
30.8
2828
Female, age 72, unknown
29.5
1827
Male, age 72, unknown
29.1
Dorsal raphe nucleus nTPM: 25.0
2750
Male, age 76, both hemispheres
36.7
2016
Female, age 72, unknown
28.4
1828
Male, age 53, unknown
25.7
2047
Male, age 72, unknown
17.9
2298
Female, age 72, unknown
16.2
Inferior colliculus nTPM: 27.9
1890
Male, age 53, unknown
31.4
2849
Male, age 72, unknown
29.5
1848
Female, age 42, unknown
26.7
2097
Female, age 72, unknown
24.1
Median raphe nucleus nTPM: 19.7
2220
Male, age 76, midline
19.7
Periaquaductal grey, anterior nTPM: 25.2
2502
Female, age 75, unknown
32.0
1947
Male, age 18, unknown
24.3
1795
Male, age 51, unknown
19.1
Periaquaductal grey, dorsal nTPM: 22.4
2464
Female, age 72, unknown
31.3
1831
Male, age 72, unknown
23.7
2850
Male, age 76, both hemispheres
17.9
1840
Male, age 53, unknown
16.6
Periaquaductal grey, lateral nTPM: 20.8
2053
Male, age 18, unknown
24.7
2272
Male, age 74, both hemispheres
21.1
2140
Male, age 76, both hemispheres
16.6
Pretectal area nTPM: 26.5
2407
Male, age 75, both hemispheres
35.7
1815
Male, age 53, unknown
35.6
2316
Male, age 76, right hemisphere
35.4
1817
Female, age 42, unknown
32.7
2007
Male, age 72, unknown
27.5
2825
Male, age 18, unknown
25.7
1816
Male, age 51, unknown
21.7
1944
Female, age 72, unknown
20.4
2224
Female, age 72, unknown
20.4
2273
Male, age 74, both hemispheres
19.6
2667
Female, age 75, unknown
17.2
Red nucleus nTPM: 44.8
1865
Male, age 51, unknown
55.8
1904
Male, age 53, unknown
52.5
2785
Male, age 18, unknown
48.1
1821
Female, age 72, unknown
47.6
2503
Female, age 72, unknown
47.3
2823
Male, age 76, right hemisphere
44.5
2769
Male, age 72, unknown
44.4
2227
Male, age 72, unknown
42.1
2588
Male, age 74, left hemisphere
41.1
2725
Female, age 75, unknown
39.7
2584
Male, age 75, left hemisphere
39.0
1954
Female, age 42, unknown
35.3
Substantia nigra nTPM: 30.1
2409
Female, age 72, unknown
39.6
2590
Female, age 75, unknown
34.8
2699
Male, age 18, unknown
32.8
2583
Male, age 75, right hemisphere
32.4
1889
Female, age 72, unknown
32.0
1851
Male, age 51, unknown
30.1
2241
Male, age 72, unknown
29.2
2665
Male, age 74, both hemispheres
26.8
1941
Male, age 53, unknown
23.0
1916
Female, age 42, unknown
19.9
Superior colliculus nTPM: 36.6
1913
Female, age 42, unknown
55.7
1995
Male, age 72, unknown
50.8
1895
Male, age 76, right hemisphere
44.8
2668
Female, age 75, unknown
38.1
2587
Male, age 74, left hemisphere
36.0
1839
Male, age 51, unknown
34.0
2664
Male, age 75, both hemispheres
32.8
1796
Male, age 53, unknown
26.4
2261
Male, age 18, unknown
23.8
2087
Female, age 72, unknown
23.7
Ventral tegmental area nTPM: 28.7
2410
Female, age 72, unknown
35.8
2223
Female, age 72, unknown
35.0
2021
Male, age 53, unknown
27.4
1942
Male, age 51, unknown
27.2
1915
Female, age 42, unknown
25.3
2218
Male, age 76, both hemispheres
21.9
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
17.3
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 17.3
Samples: 139
Max nTPM: 54.0
Min nTPM: 6.1
Std nTPM: 7.9
Median nTPM: 15.3
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
54.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
44.6
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
41.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
36.8
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
36.0
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
35.4
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
31.8
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
29.5
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
28.5
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
28.2
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
27.8
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
27.6
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
27.6
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
27.6
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
27.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
27.5
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
26.8
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
26.4
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
25.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
25.8
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
25.6
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
25.5
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
25.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
24.8
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
24.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
24.5
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
24.4
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
24.4
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
24.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
23.6
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
23.4
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
23.0
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
22.6
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
22.5
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
22.2
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
21.9
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
20.9
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
20.7
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
20.2
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
20.1
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
19.7
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
19.4
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
19.1
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
18.9
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
18.5
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
18.5
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
18.4
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
18.3
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
18.2
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
17.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
17.8
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
17.7
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
17.7
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
17.4
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
17.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
17.2
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
17.0
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
17.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
17.0
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
16.9
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
16.7
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
16.6
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
16.4
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
16.1
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
16.0
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
16.0
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
15.9
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
15.8
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
15.3
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
15.3
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
15.1
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
15.0
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
14.9
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
14.9
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
14.6
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
14.6
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
14.4
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
14.4
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
14.3
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
14.2
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
14.1
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
13.9
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
13.9
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
13.7
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
13.6
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
13.6
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
13.6
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
13.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
13.2
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
13.2
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
13.2
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
13.0
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
13.0
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
12.9
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
12.9
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
12.8
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
12.8
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
12.8
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
12.6
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
12.6
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
12.5
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
12.4
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
12.2
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
12.1
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
12.0
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
11.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
11.6
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
11.3
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
11.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
11.3
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
11.2
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
11.0
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
10.7
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
10.7
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
10.5
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
10.4
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
10.1
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
9.9
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
9.8
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
9.5
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
9.4
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
9.4
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
9.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
9.3
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
9.0
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
8.8
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
8.8
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
8.6
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
8.6
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
8.5
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
8.1
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
8.0
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
8.0
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
7.9
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
7.8
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
6.6
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
6.5
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
6.1
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
6.1
Show allShow less
MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
18.9
Mouse sample
Sample description
nTPM
Midbrain nTPM: 18.9
Samples: 4
Max nTPM: 20.1
Min nTPM: 16.7
Sample A
Male
16.7
Sample B
Male
18.9
Sample C
Female
20.0
Sample D
Female
20.1
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.