HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:29.8 nTPM
HPA Brain:68.3 nTPM
GTEx:29.8 nTPM
FANTOM5:197.2 Scaled Tags Per Million
Pig:57.8 nTPM
Mouse:16.1 nTPM
Allen mouse:0.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA009678Antibody HPA010095
Glial cells LowNot detected
Neuronal cells Not detectedLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 68.3
Sample id Sample description nTPM
Hippocampus
nTPM: 68.3
1911 Female, age 85, right hemisphere 78.2
2529 Female, age 94, left hemisphere 74.7
2148 Female, age 91, left hemisphere 74.5
1855 Male, age 76, left hemisphere 67.7
1898 Male, age 80, left hemisphere 67.6
2621 Female, age 67, right hemisphere 46.8
Dentate gyrus
nTPM: 54.4
2528 Male, age 74, both hemispheres 77.4
2246 Female, age 85, both hemispheres 64.7
2010 Male, age 76, both hemispheres 57.1
1927 Female, age 91, both hemispheres 49.2
2530 Female, age 94, left hemisphere 44.1
2531 Female, age 67, both hemispheres 33.8
Entorhinal gyrus
nTPM: 55.4
2117 Female, age 91, right hemisphere 91.1
1938 Female, age 85, left hemisphere 60.0
1787 Male, age 76, left hemisphere 55.1
2686 Male, age 75, right hemisphere 52.4
2764 Male, age 80, right hemisphere 39.5
2613 Female, age 94, left hemisphere 34.6
Hippocampus, CA1
nTPM: 58.3
2527 Male, age 74, both hemispheres 72.4
2082 Female, age 91, right hemisphere 72.1
1873 Female, age 85, both hemispheres 71.6
2045 Male, age 76, both hemispheres 47.5
2749 Male, age 80, left hemisphere 28.1
Hippocampus, CA2
nTPM: 59.8
2249 Male, age 74, both hemispheres 81.4
2113 Female, age 91, right hemisphere 77.9
1940 Female, age 85, left hemisphere 71.4
1963 Male, age 80, left hemisphere 56.9
2437 Female, age 94, left hemisphere 39.2
1892 Male, age 76, both hemispheres 31.9
Hippocampus, CA3
nTPM: 49.8
1891 Female, age 85, both hemispheres 75.8
2436 Male, age 74, both hemispheres 57.0
2620 Female, age 94, left hemisphere 43.8
1867 Male, age 76, both hemispheres 43.6
2861 Female, age 67, both hemispheres 40.3
2137 Male, age 80, left hemisphere 38.4
Parahippocampal cortex
nTPM: 54.5
2692 Male, age 74, both hemispheres 72.7
2018 Male, age 76, both hemispheres 59.0
1990 Female, age 91, right hemisphere 58.1
2250 Female, age 67, right hemisphere 57.8
2622 Female, age 67, right hemisphere 55.1
1933 Female, age 85, both hemispheres 55.0
2245 Female, age 91, both hemispheres 54.1
1850 Male, age 80, both hemispheres 52.5
2693 Female, age 94, both hemispheres 43.0
2532 Female, age 72, left hemisphere 38.1
Perirhinal gyrus
nTPM: 43.9
1847 Female, age 91, left hemisphere 48.8
2521 Female, age 94, right hemisphere 47.1
1794 Male, age 80, right hemisphere 43.7
1841 Female, age 85, right hemisphere 40.8
2848 Male, age 76, right hemisphere 38.9
Subiculum
nTPM: 64.4
2729 Female, age 91, right hemisphere 87.1
2619 Male, age 74, both hemispheres 81.4
2042 Male, age 76, both hemispheres 60.1
1901 Male, age 80, both hemispheres 56.3
1977 Female, age 85, both hemispheres 54.0
2438 Female, age 94, left hemisphere 47.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 29.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 29.8
Samples: 255

Max nTPM: 82.5
Min nTPM: 10.7
Std nTPM: 11.8
Median nTPM: 27.4
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 82.5
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 73.3
GTEX-1PWST-0011-R1b-SM-F2I38 70-79 years, male 71.9
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 64.3
GTEX-1R9PO-0011-R1b-SM-F2I2G 60-69 years, female 61.8
GTEX-ZZPT-0011-R1b-SM-GNINL 50-59 years, male 59.2
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 56.8
GTEX-11TTK-0011-R1b-SM-GIN92 60-69 years, female 55.9
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 54.8
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 53.7
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 52.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 197.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 197.2
FF:10153-102I9 76 years, female 232.4
FF:10169-103B7 60 years, female 162.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 57.8
Pig sample Sample description nTPM
Subiculum
nTPM: 57.8
Samples: 4

Max nTPM: 65.1
Min nTPM: 54.8
Sample A Female 65.1
Sample B Female 56.1
Sample C Male 54.8
Sample D Male 55.2
Dorsal hippocampus
nTPM: 51.9
Samples: 4

Max nTPM: 62.1
Min nTPM: 40.6
Sample A Female 62.1
Sample B Female 44.3
Sample C Male 60.6
Sample D Male 40.6
Entorhinal cortex
nTPM: 54.0
Samples: 4

Max nTPM: 61.7
Min nTPM: 47.6
Sample A Female 48.4
Sample B Female 61.7
Sample C Male 58.4
Sample D Male 47.6
Ventral hippocampus
nTPM: 52.7
Samples: 4

Max nTPM: 59.9
Min nTPM: 45.4
Sample A Female 51.1
Sample B Female 45.4
Sample C Male 59.9
Sample D Male 54.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 16.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 15.1
Samples: 4

Max nTPM: 18.1
Min nTPM: 10.2
Sample A Male 18.1
Sample B Male 15.7
Sample C Female 16.5
Sample D Female 10.2
Hippocampal formation
nTPM: 16.1
Samples: 4

Max nTPM: 16.7
Min nTPM: 15.4
Sample A Male 15.4
Sample B Male 15.9
Sample C Female 16.7
Sample D Female 16.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.2
74988591 Antisense, RP_060315_05_F04, Mouse strain C57BL/6J (56 days, male) 0.3
70528133 Antisense, RP_050623_01_H06, Mouse strain C57BL/6J (56 days, male) 0.2
70919967 Antisense, RP_050713_02_D10, Mouse strain C57BL/6J (56 days, male) 0.2

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