MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:216.5 nTPM
HPA Brain:125.6 nTPM
GTEx:216.5 nTPM
FANTOM5:57.6 Scaled Tags Per Million
Pig:160.7 nTPM
Mouse:26.4 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 125.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 93.6
2586 Male, age 75, left hemisphere 129.7
2828 Female, age 72, unknown 126.3
2666 Male, age 74, left hemisphere 99.3
1833 Male, age 53, unknown 96.9
1870 Female, age 42, unknown 96.1
1827 Male, age 72, unknown 88.8
1830 Male, age 51, unknown 87.5
2411 Female, age 72, unknown 81.4
2019 Male, age 18, unknown 69.5
2219 Male, age 76, both hemispheres 60.1
Dorsal raphe nucleus
nTPM: 125.6
2016 Female, age 72, unknown 149.1
2047 Male, age 72, unknown 134.1
2298 Female, age 72, unknown 129.8
1828 Male, age 53, unknown 118.1
2750 Male, age 76, both hemispheres 97.1
Inferior colliculus
nTPM: 105.5
2849 Male, age 72, unknown 112.4
1890 Male, age 53, unknown 108.6
1848 Female, age 42, unknown 104.8
2097 Female, age 72, unknown 96.5
Median raphe nucleus
nTPM: 90.4
2220 Male, age 76, midline 90.4
Periaquaductal grey, anterior
nTPM: 98.0
1795 Male, age 51, unknown 107.3
2502 Female, age 75, unknown 102.8
1947 Male, age 18, unknown 83.8
Periaquaductal grey, dorsal
nTPM: 117.3
2850 Male, age 76, both hemispheres 142.1
1840 Male, age 53, unknown 121.7
1831 Male, age 72, unknown 104.5
2464 Female, age 72, unknown 100.8
Periaquaductal grey, lateral
nTPM: 115.6
2140 Male, age 76, both hemispheres 128.2
2053 Male, age 18, unknown 118.1
2272 Male, age 74, both hemispheres 100.5
Pretectal area
nTPM: 92.4
2825 Male, age 18, unknown 116.8
2224 Female, age 72, unknown 112.7
2273 Male, age 74, both hemispheres 105.4
2316 Male, age 76, right hemisphere 101.2
2667 Female, age 75, unknown 94.0
1817 Female, age 42, unknown 93.5
1815 Male, age 53, unknown 89.4
1944 Female, age 72, unknown 86.5
1816 Male, age 51, unknown 75.3
2407 Male, age 75, both hemispheres 75.1
2007 Male, age 72, unknown 67.0
Red nucleus
nTPM: 102.5
2227 Male, age 72, unknown 115.0
1821 Female, age 72, unknown 114.5
2769 Male, age 72, unknown 114.2
1954 Female, age 42, unknown 112.4
2503 Female, age 72, unknown 107.8
1865 Male, age 51, unknown 107.7
1904 Male, age 53, unknown 107.6
2823 Male, age 76, right hemisphere 105.8
2588 Male, age 74, left hemisphere 99.0
2725 Female, age 75, unknown 98.0
2785 Male, age 18, unknown 75.9
2584 Male, age 75, left hemisphere 72.2
Substantia nigra
nTPM: 115.5
2699 Male, age 18, unknown 188.6
1916 Female, age 42, unknown 136.0
2665 Male, age 74, both hemispheres 135.0
1851 Male, age 51, unknown 124.9
2590 Female, age 75, unknown 103.6
2583 Male, age 75, right hemisphere 99.1
2409 Female, age 72, unknown 98.5
2241 Male, age 72, unknown 91.8
1941 Male, age 53, unknown 88.7
1889 Female, age 72, unknown 88.5
Superior colliculus
nTPM: 96.6
1995 Male, age 72, unknown 124.1
1913 Female, age 42, unknown 102.7
2587 Male, age 74, left hemisphere 101.5
2668 Female, age 75, unknown 98.9
1796 Male, age 53, unknown 98.3
2087 Female, age 72, unknown 94.4
1839 Male, age 51, unknown 90.8
2261 Male, age 18, unknown 88.3
2664 Male, age 75, both hemispheres 83.9
1895 Male, age 76, right hemisphere 83.0
Ventral tegmental area
nTPM: 111.9
1915 Female, age 42, unknown 130.0
2021 Male, age 53, unknown 121.5
1942 Male, age 51, unknown 114.1
2410 Female, age 72, unknown 106.8
2218 Male, age 76, both hemispheres 100.4
2223 Female, age 72, unknown 98.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 216.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 216.5
Samples: 183

Max nTPM: 757.6
Min nTPM: 35.0
Std nTPM: 105.8
Median nTPM: 188.4
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 757.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 750.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 531.4
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 504.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 497.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 479.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 477.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 472.8
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 447.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 423.1
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 378.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 57.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 57.6
FF:10158-103A5 76 years, female 57.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 160.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 160.7
Samples: 4

Max nTPM: 190.3
Min nTPM: 124.7
Sample A Female 190.3
Sample B Female 124.7
Sample C Male 138.5
Sample D Male 189.4
Midbrain
nTPM: 159.7
Samples: 4

Max nTPM: 322.6
Min nTPM: 79.2
Sample A Female 322.6
Sample B Female 145.0
Sample C Male 91.9
Sample D Male 79.2
Periaqueductal gray
nTPM: 120.2
Samples: 3

Max nTPM: 128.9
Min nTPM: 105.2
Sample B Female 126.5
Sample C Male 128.9
Sample D Male 105.2
Superior colliculi
nTPM: 131.2
Samples: 4

Max nTPM: 157.5
Min nTPM: 117.5
Sample A Female 157.5
Sample B Female 123.4
Sample C Male 117.5
Sample D Male 126.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 26.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.5
Samples: 4

Max nTPM: 28.2
Min nTPM: 23.5
Sample A Male 28.2
Sample B Male 27.6
Sample C Female 23.5
Sample D Female 26.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68191354 Antisense, RP_041129_01_A06, Mouse strain C57BL/6J (56 days, male) 0.1

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