MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.8 nTPM
HPA Brain:125.9 nTPM
GTEx:22.8 nTPM
FANTOM5:42.3 Scaled Tags Per Million
Mouse:22.3 nTPM
Allen mouse:4.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 125.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 96.1
2586 Male, age 75, left hemisphere 161.7
2828 Female, age 72, unknown 128.3
1827 Male, age 72, unknown 115.0
2666 Male, age 74, left hemisphere 110.6
2019 Male, age 18, unknown 81.7
2219 Male, age 76, both hemispheres 80.9
1833 Male, age 53, unknown 75.9
1870 Female, age 42, unknown 72.6
1830 Male, age 51, unknown 68.1
2411 Female, age 72, unknown 66.6
Dorsal raphe nucleus
nTPM: 86.5
2016 Female, age 72, unknown 94.9
1828 Male, age 53, unknown 92.6
2047 Male, age 72, unknown 90.8
2298 Female, age 72, unknown 90.1
2750 Male, age 76, both hemispheres 64.3
Inferior colliculus
nTPM: 99.9
2849 Male, age 72, unknown 111.6
1848 Female, age 42, unknown 106.5
1890 Male, age 53, unknown 92.3
2097 Female, age 72, unknown 89.3
Median raphe nucleus
nTPM: 83.8
2220 Male, age 76, midline 83.8
Periaquaductal grey, anterior
nTPM: 102.4
1795 Male, age 51, unknown 115.1
2502 Female, age 75, unknown 108.9
1947 Male, age 18, unknown 83.2
Periaquaductal grey, dorsal
nTPM: 113.6
2850 Male, age 76, both hemispheres 125.5
1840 Male, age 53, unknown 121.3
1831 Male, age 72, unknown 111.7
2464 Female, age 72, unknown 95.8
Periaquaductal grey, lateral
nTPM: 109.5
2140 Male, age 76, both hemispheres 128.2
2053 Male, age 18, unknown 109.6
2272 Male, age 74, both hemispheres 90.5
Pretectal area
nTPM: 125.9
1816 Male, age 51, unknown 195.8
1944 Female, age 72, unknown 182.7
1815 Male, age 53, unknown 136.1
2007 Male, age 72, unknown 130.4
2667 Female, age 75, unknown 118.9
1817 Female, age 42, unknown 116.9
2407 Male, age 75, both hemispheres 112.6
2273 Male, age 74, both hemispheres 105.6
2825 Male, age 18, unknown 102.0
2316 Male, age 76, right hemisphere 94.9
2224 Female, age 72, unknown 88.8
Red nucleus
nTPM: 79.7
2725 Female, age 75, unknown 91.7
2785 Male, age 18, unknown 88.8
2588 Male, age 74, left hemisphere 87.8
2503 Female, age 72, unknown 86.9
2584 Male, age 75, left hemisphere 84.1
1954 Female, age 42, unknown 79.0
2769 Male, age 72, unknown 76.0
2227 Male, age 72, unknown 74.2
1904 Male, age 53, unknown 73.6
1821 Female, age 72, unknown 72.9
1865 Male, age 51, unknown 70.8
2823 Male, age 76, right hemisphere 70.4
Substantia nigra
nTPM: 92.3
1889 Female, age 72, unknown 113.4
2665 Male, age 74, both hemispheres 104.0
2583 Male, age 75, right hemisphere 99.2
1916 Female, age 42, unknown 97.0
1941 Male, age 53, unknown 94.6
2699 Male, age 18, unknown 91.0
1851 Male, age 51, unknown 88.7
2590 Female, age 75, unknown 82.4
2241 Male, age 72, unknown 79.2
2409 Female, age 72, unknown 73.2
Superior colliculus
nTPM: 118.0
2664 Male, age 75, both hemispheres 168.7
2261 Male, age 18, unknown 166.9
2087 Female, age 72, unknown 157.4
1796 Male, age 53, unknown 116.9
2668 Female, age 75, unknown 105.2
1913 Female, age 42, unknown 100.6
1995 Male, age 72, unknown 94.1
1895 Male, age 76, right hemisphere 92.3
1839 Male, age 51, unknown 89.0
2587 Male, age 74, left hemisphere 88.8
Ventral tegmental area
nTPM: 81.1
1942 Male, age 51, unknown 88.6
1915 Female, age 42, unknown 88.4
2218 Male, age 76, both hemispheres 85.2
2021 Male, age 53, unknown 83.2
2410 Female, age 72, unknown 71.7
2223 Female, age 72, unknown 69.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 22.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.8
Samples: 183

Max nTPM: 50.6
Min nTPM: 3.0
Std nTPM: 8.7
Median nTPM: 22.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 50.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 48.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 45.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 44.4
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 44.1
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 42.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 41.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 41.3
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 39.0
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 38.7
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 38.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 42.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 42.3
FF:10158-103A5 76 years, female 42.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 22.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.3
Samples: 4

Max nTPM: 23.2
Min nTPM: 20.4
Sample A Male 20.4
Sample B Male 22.6
Sample C Female 22.8
Sample D Female 23.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.0
72182988 Antisense, RP_050915_04_G02, Mouse strain C57BL/6J (56 days, male) 4.0

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