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  • KIF5A
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1210.5 nTPM
HPA Brain:571.5 nTPM
GTEx:1210.5 nTPM
FANTOM5:638.3 Scaled Tags Per Million
Pig:231.4 nTPM
Mouse:1093.5 nTPM
Allen mouse:9.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

571.5
Sample id Sample description nTPM
Amygdala
nTPM: 338.5
2514 Male, age 75, right hemisphere 476.0
2517 Female, age 94, left hemisphere 443.5
2814 Male, age 76, right hemisphere 336.6
1987 Female, age 91, left hemisphere 246.6
2695 Female, age 67, right hemisphere 190.0
Basal amygdala
nTPM: 526.5
2827 Female, age 67, right hemisphere 871.4
2685 Female, age 94, left hemisphere 599.3
2609 Male, age 75, right hemisphere 524.0
2110 Male, age 80, left hemisphere 451.2
2243 Female, age 91, right hemisphere 362.1
1955 Male, age 76, both hemispheres 350.7
Central amygdala
nTPM: 571.5
2826 Female, age 94, left hemisphere 1372.7
2239 Male, age 80, left hemisphere 439.9
2515 Male, age 75, right hemisphere 392.9
1905 Male, age 76, both hemispheres 326.8
2701 Female, age 91, right hemisphere 325.4
Corticomedial amygdala
nTPM: 464.4
2429 Female, age 94, left hemisphere 693.3
2535 Female, age 67, right hemisphere 648.9
2829 Male, age 80, left hemisphere 441.5
2240 Male, age 76, both hemispheres 381.9
2428 Male, age 75, right hemisphere 331.5
2242 Female, age 91, right hemisphere 289.3
Lateral amygdala
nTPM: 515.1
2534 Female, age 94, left hemisphere 935.7
2830 Female, age 67, right hemisphere 564.1
2516 Male, age 75, right hemisphere 483.7
2256 Male, age 80, left hemisphere 459.6
2255 Female, age 91, right hemisphere 346.5
1883 Male, age 76, both hemispheres 301.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1210.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1210.5
Samples: 181

Max nTPM: 3329.1
Min nTPM: 200.7
Std nTPM: 539.3
Median nTPM: 1085.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 3329.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 3247.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 3009.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 2734.5
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 2723.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 2415.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 2317.5
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 2284.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 2276.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 2263.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 2257.6
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 2222.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 2144.9
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 2136.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 2085.4
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 2067.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2047.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 2042.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1985.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1984.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1858.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1840.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1732.8
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 1727.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1726.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1719.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1710.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1688.0
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 1649.2
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 1648.7
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 1622.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1606.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1602.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1596.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1595.8
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 1574.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1573.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1572.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1565.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1528.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1516.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1488.0
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 1463.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1460.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1454.2
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 1452.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1448.0
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 1438.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1409.2
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 1401.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1384.8
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 1383.0
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 1368.7
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 1367.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1350.5
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 1337.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1329.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1321.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1318.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1315.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1314.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1308.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1299.3
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 1293.9
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 1292.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1285.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1258.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1250.8
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 1239.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1228.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1223.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1215.0
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 1209.8
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 1208.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1197.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1194.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1185.4
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 1184.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1179.7
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 1177.1
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 1170.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 1166.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1165.2
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 1162.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 1151.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1150.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1141.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1137.2
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 1121.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1092.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1085.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1080.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1071.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1060.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1059.7
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 1054.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1054.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 1052.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1048.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 1045.1
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 1037.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1034.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1032.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1029.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1025.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1017.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1009.5
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 1007.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1002.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 993.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 989.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 983.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 962.1
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 961.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 960.7
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 955.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 954.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 945.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 941.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 920.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 911.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 910.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 904.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 897.3
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 892.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 884.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 871.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 866.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 860.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 850.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 838.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 830.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 827.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 825.8
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 824.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 807.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 807.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 807.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 806.0
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 804.6
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 795.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 794.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 789.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 777.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 774.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 771.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 747.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 742.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 741.9
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 729.0
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 726.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 724.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 713.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 712.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 708.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 702.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 702.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 693.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 691.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 690.0
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 681.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 661.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 657.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 656.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 636.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 620.7
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 620.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 619.1
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 614.7
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 583.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 574.1
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 573.2
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 571.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 571.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 559.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 551.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 547.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 544.9
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 506.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 482.9
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 200.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

638.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 638.3
FF:10151-102I7 76 years, female 638.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

231.4
Pig sample Sample description nTPM
Amygdala
nTPM: 231.3
Samples: 4

Max nTPM: 289.0
Min nTPM: 174.9
Sample A Female 289.0
Sample B Female 213.2
Sample C Male 174.9
Sample D Male 248.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1093.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 1093.5
Samples: 4

Max nTPM: 1444.5
Min nTPM: 864.7
Sample A Male 864.7
Sample B Male 1065.9
Sample C Female 1444.5
Sample D Female 998.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

9.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 9.4
79556603 Antisense, RP_071018_02_A11, Mouse strain C57BL/6J (56 days, male) 9.4
79360322 Antisense, RP_071018_02_A11, Mouse strain C57BL/6J (56 days, male) 8.4

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