BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:104.7 nTPM
HPA Brain:43.5 nTPM
GTEx:104.7 nTPM
FANTOM5:83.5 Scaled Tags Per Million
Pig:2.8 nTPM
Mouse:1.4 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 43.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 43.5
2289 Male, age 61, right hemisphere 61.9
2290 Female, age 72, unknown 49.3
2288 Male, age 75, left hemisphere 45.6
2481 Female, age 94, left hemisphere 44.2
1857 Female, age 85, left hemisphere 41.0
1854 Male, age 80, left hemisphere 39.0
1781 Male, age 74, unknown 37.9
2846 Female, age 79, unknown 29.2
Globus pallidus, externus
nTPM: 3.3
2646 Male, age 61, right hemisphere 8.1
2395 Male, age 75, both hemispheres 3.7
2772 Female, age 79, unknown 2.1
2567 Female, age 72, unknown 1.3
1996 Male, age 80, right hemisphere 1.2
Globus pallidus, internus
nTPM: 2.6
2483 Female, age 94, right hemisphere 10.1
2287 Male, age 75, right hemisphere 3.1
2778 Female, age 91, both hemispheres 1.5
2037 Male, age 80, right hemisphere 1.1
2566 Female, age 72, unknown 1.0
1818 Male, age 74, unknown 0.8
2111 Female, age 85, right hemisphere 0.5
Nucleus accumbens
nTPM: 43.0
2286 Male, age 75, left hemisphere 78.2
2824 Male, age 61, right hemisphere 66.4
1783 Male, age 74, unknown 62.1
1856 Female, age 91, right hemisphere 36.1
1806 Female, age 85, left hemisphere 33.7
2698 Female, age 72, unknown 31.3
2391 Female, age 94, left hemisphere 18.3
2732 Male, age 80, right hemisphere 18.2
Nucleus basalis of Meynert
nTPM: 14.8
2569 Male, age 61, both hemispheres 15.5
2821 Male, age 75, both hemispheres 15.4
2393 Male, age 80, right hemisphere 15.3
2484 Female, age 94, left hemisphere 12.9
Nucleus of the diagonal band
nTPM: 26.3
2195 Female, age 85, both hemispheres 48.6
1812 Female, age 91, both hemispheres 29.1
2029 Male, age 61, right hemisphere 20.1
2775 Male, age 80, right hemisphere 17.7
1979 Male, age 74, unknown 15.9
Putamen
nTPM: 24.1
2482 Female, age 94, left hemisphere 38.2
2489 Female, age 72, unknown 31.8
1937 Female, age 91, right hemisphere 25.8
1838 Male, age 80, right hemisphere 22.2
1829 Male, age 74, unknown 20.8
2466 Female, age 79, unknown 16.5
2647 Male, age 75, left hemisphere 13.3
Septal nuclei
nTPM: 38.0
1960 Male, age 74, unknown 87.7
2059 Female, age 85, both hemispheres 70.3
2031 Female, age 72, unknown 44.7
2009 Female, age 91, both hemispheres 21.4
2629 Female, age 94, right hemisphere 19.0
2199 Male, age 80, right hemisphere 13.5
2394 Male, age 61, left hemisphere 9.3
Stria terminalis, bed nucleus
nTPM: 6.1
2486 Female, age 94, both hemispheres 10.3
1974 Female, age 91, both hemispheres 4.7
2201 Male, age 74, unknown 3.4

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 104.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 104.7
Samples: 300

Max nTPM: 342.4
Min nTPM: 1.5
Std nTPM: 65.2
Median nTPM: 91.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 342.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 326.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 314.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 309.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 307.1
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 302.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 276.0
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 266.9
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 260.1
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 247.2
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 246.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 89.8
Samples: 285

Max nTPM: 403.0
Min nTPM: 0.6
Std nTPM: 60.9
Median nTPM: 77.2
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 403.0
GTEX-1MJK2-0011-R6a-SM-EXUS3 50-59 years, male 328.4
GTEX-1JN1M-0011-R6b-SM-G9EQ7 60-69 years, female 306.2
GTEX-TSE9-0011-R6A-SM-3DB7L 60-69 years, female 256.8
GTEX-R55E-0011-R6A-SM-2TC5T 20-29 years, male 249.8
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 234.0
GTEX-14ABY-0011-R6a-SM-5PNWR 50-59 years, male 222.1
GTEX-13PVQ-0011-R6a-SM-H6612 50-59 years, male 218.9
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 218.0
GTEX-1GF9V-0011-R6b-SM-CJI2Q 60-69 years, male 215.4
GTEX-14BIL-0011-R6b-SM-GPRXF 50-59 years, male 214.6
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Brain - Putamen (basal ganglia)
Average nTPM: 89.9
Samples: 254

Max nTPM: 311.2
Min nTPM: 0.5
Std nTPM: 57.6
Median nTPM: 78.7
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 311.2
GTEX-1NV8Z-0011-R7a-SM-F3K4J 60-69 years, male 292.8
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 291.4
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 267.4
GTEX-1KWVE-0011-R7b-SM-F6486 30-39 years, male 261.2
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 252.8
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 244.3
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 242.1
GTEX-1IOXB-0011-R7b-SM-HAUZE 50-59 years, male 230.5
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 220.6
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 213.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 83.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 63.2
FF:10164-103B2 76 years, female 63.2
Nucleus accumbens
Scaled Tags Per Million: 83.5
FF:10037-101F1 23-56 years, mixed 83.5
Putamen
Scaled Tags Per Million: 68.7
FF:10176-103C5 60 years, female 68.7
Globus pallidus
Scaled Tags Per Million: 8.5
FF:10175-103C4 60 years, female 11.7
FF:10161-103A8 76 years, female 5.3

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 2.8
Pig sample Sample description nTPM
Caudate
nTPM: 2.8
Samples: 4

Max nTPM: 2.9
Min nTPM: 2.6
Sample A Female 2.9
Sample B Female 2.6
Sample C Male 2.8
Sample D Male 2.9
Putamen
nTPM: 2.1
Samples: 4

Max nTPM: 2.8
Min nTPM: 1.0
Sample A Female 1.0
Sample B Female 2.8
Sample C Male 1.9
Sample D Male 2.5
Septum
nTPM: 1.5
Samples: 4

Max nTPM: 1.7
Min nTPM: 1.1
Sample A Female 1.6
Sample B Female 1.7
Sample C Male 1.1
Sample D Male 1.7
Ventral pallidum
nTPM: 1.8
Samples: 4

Max nTPM: 2.2
Min nTPM: 1.2
Sample A Female 2.1
Sample B Female 1.6
Sample C Male 1.2
Sample D Male 2.2

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 1.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.7
Samples: 4

Max nTPM: 1.3
Min nTPM: 0.4
Sample A Male 0.4
Sample B Male 0.6
Sample C Female 1.3
Sample D Female 0.6
Septum
nTPM: 0.5
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.3
Sample A Male 0.7
Sample B Male 0.5
Sample C Female 0.5
Sample D Female 0.3
Ventral forebrain
nTPM: 1.5
Samples: 4

Max nTPM: 1.9
Min nTPM: 0.9
Sample A Male 1.3
Sample B Male 0.9
Sample C Female 1.7
Sample D Female 1.9

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
79749606 Antisense, RP_071204_02_D08, Mouse strain C57BL/6J (56 days, male) 0.1
1111 Antisense, RP_Baylor_103147, Mouse strain C57BL/6J (56 days, male) 0.0
1112 Antisense, RP_Baylor_103147, Mouse strain C57BL/6J (56 days, male) 0.0
74511885 Antisense, RP_060117_02_C08, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
79749606 Antisense, RP_071204_02_D08, Mouse strain C57BL/6J (56 days, male) 0.1
1111 Antisense, RP_Baylor_103147, Mouse strain C57BL/6J (56 days, male) 0.0
1112 Antisense, RP_Baylor_103147, Mouse strain C57BL/6J (56 days, male) 0.0
74511885 Antisense, RP_060117_02_C08, Mouse strain C57BL/6J (56 days, male) 0.0

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