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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:94.3 nTPM
HPA Brain:209.9 nTPM
GTEx:94.3 nTPM
FANTOM5:141.7 Scaled Tags Per Million
Pig:403.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

209.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 134.6
1981 Female, age 72, midline 167.0
2194 Female, age 79, both hemispheres 157.8
2048 Male, age 55, midline 146.2
2816 Male, age 47, midline 109.5
2565 Male, age 75, midline 92.3
Cervical spinal cord, dorsal horn
nTPM: 209.9
2297 Male, age 75, both hemispheres 272.1
1877 Male, age 55, unknown 231.3
2721 Male, age 90, both hemispheres 230.1
2069 Male, age 47, both hemispheres 213.8
2173 Female, age 72, unknown 169.1
2296 Male, age 66, both hemispheres 142.8
Cervical spinal cord, ventral horn
nTPM: 121.3
2068 Male, age 55, unknown 158.9
2820 Female, age 79, both hemispheres 140.2
2295 Male, age 66, both hemispheres 126.5
2480 Male, age 75, both hemispheres 115.7
2098 Female, age 72, unknown 100.7
2809 Male, age 90, both hemispheres 85.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

94.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 94.3
Samples: 204

Max nTPM: 357.8
Min nTPM: 18.0
Std nTPM: 45.1
Median nTPM: 84.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 357.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 320.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 284.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 227.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 217.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 212.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 198.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 179.9
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 176.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 173.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 171.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 162.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 161.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 161.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 158.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 154.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 151.1
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 150.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 145.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 141.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 140.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 140.5
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 140.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 140.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 135.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 134.5
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 133.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 133.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 129.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 128.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 128.0
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 126.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 125.9
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 125.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 123.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 122.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 122.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 122.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 121.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 120.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 118.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 117.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 116.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 116.4
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 115.1
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 113.9
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 112.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 112.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 112.6
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 109.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 108.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 108.5
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 108.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 107.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 106.7
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 105.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 105.3
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 105.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 102.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 102.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 101.1
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 100.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 100.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 100.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 100.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 99.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 99.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 99.1
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 98.7
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 98.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 98.6
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 98.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 98.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 97.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 97.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 97.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 97.0
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 94.8
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 94.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 93.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 93.9
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 93.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 92.8
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 92.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 92.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 91.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 91.3
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 90.0
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 90.0
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 89.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 88.9
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 88.2
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 88.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 87.5
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 87.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 86.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 86.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 86.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 84.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 84.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 84.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 84.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 84.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 84.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 84.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 84.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 83.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 83.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 82.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 82.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 82.0
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 81.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 81.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 81.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 80.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 80.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 80.1
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 79.8
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 79.3
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 79.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 78.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 78.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 78.3
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 77.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 77.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 77.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 77.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 76.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 76.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 76.3
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 75.1
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 74.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 73.8
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 73.4
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 72.4
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 72.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 72.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 72.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 71.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 71.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 71.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 71.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 70.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 70.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 70.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 69.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 69.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 69.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 68.9
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 68.5
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 68.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 68.0
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 67.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 67.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 67.3
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 67.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 66.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 66.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 65.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 64.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 64.0
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 63.5
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 63.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 63.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 62.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 61.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 61.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 61.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 60.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 59.2
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 59.1
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 58.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 58.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 58.0
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 57.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 57.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 57.1
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 55.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 54.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 53.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 53.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 52.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 52.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 51.8
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 51.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 50.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 50.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 49.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 49.6
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 49.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 48.1
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 46.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 45.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 44.1
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 43.0
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 41.4
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 41.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 40.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 39.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 37.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 36.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 35.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 32.3
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 18.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

141.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 141.7
FF:10181-103D1 60 years, female 159.8
FF:10159-103A6 76 years, female 123.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

403.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 317.3
Samples: 4

Max nTPM: 371.2
Min nTPM: 231.3
Sample A Female 352.6
Sample B Female 314.2
Sample C Male 231.3
Sample D Male 371.2
Ventral spinal cord
nTPM: 403.9
Samples: 4

Max nTPM: 443.1
Min nTPM: 371.7
Sample A Female 371.7
Sample B Female 443.1
Sample C Male 403.3
Sample D Male 397.6

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