MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:300.6 nTPM
HPA Brain:104.8 nTPM
GTEx:300.6 nTPM
FANTOM5:129.1 Scaled Tags Per Million
Pig:15.3 nTPM
Mouse:915.8 nTPM
Allen mouse:2.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 104.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 87.1
2019 Male, age 18, unknown 116.3
2411 Female, age 72, unknown 103.7
1827 Male, age 72, unknown 95.4
2219 Male, age 76, both hemispheres 89.1
1870 Female, age 42, unknown 87.5
2586 Male, age 75, left hemisphere 85.7
2666 Male, age 74, left hemisphere 79.4
1833 Male, age 53, unknown 76.0
1830 Male, age 51, unknown 69.4
2828 Female, age 72, unknown 68.0
Dorsal raphe nucleus
nTPM: 90.5
2298 Female, age 72, unknown 114.1
1828 Male, age 53, unknown 97.4
2047 Male, age 72, unknown 88.3
2750 Male, age 76, both hemispheres 85.6
2016 Female, age 72, unknown 67.0
Inferior colliculus
nTPM: 96.2
2097 Female, age 72, unknown 117.1
1890 Male, age 53, unknown 92.4
1848 Female, age 42, unknown 92.1
2849 Male, age 72, unknown 83.1
Median raphe nucleus
nTPM: 84.8
2220 Male, age 76, midline 84.8
Periaquaductal grey, anterior
nTPM: 88.7
1947 Male, age 18, unknown 92.0
1795 Male, age 51, unknown 88.0
2502 Female, age 75, unknown 86.1
Periaquaductal grey, dorsal
nTPM: 74.0
1840 Male, age 53, unknown 83.4
2464 Female, age 72, unknown 74.1
2850 Male, age 76, both hemispheres 70.6
1831 Male, age 72, unknown 67.8
Periaquaductal grey, lateral
nTPM: 69.7
2272 Male, age 74, both hemispheres 75.2
2053 Male, age 18, unknown 70.6
2140 Male, age 76, both hemispheres 63.3
Pretectal area
nTPM: 101.6
2007 Male, age 72, unknown 148.9
1816 Male, age 51, unknown 134.1
1817 Female, age 42, unknown 132.9
1944 Female, age 72, unknown 112.5
1815 Male, age 53, unknown 109.4
2667 Female, age 75, unknown 94.6
2224 Female, age 72, unknown 89.2
2273 Male, age 74, both hemispheres 75.5
2316 Male, age 76, right hemisphere 74.5
2825 Male, age 18, unknown 73.3
2407 Male, age 75, both hemispheres 73.0
Red nucleus
nTPM: 91.8
1821 Female, age 72, unknown 138.1
2725 Female, age 75, unknown 100.4
2785 Male, age 18, unknown 98.5
2588 Male, age 74, left hemisphere 93.7
2503 Female, age 72, unknown 90.1
1865 Male, age 51, unknown 89.2
2227 Male, age 72, unknown 84.3
2584 Male, age 75, left hemisphere 83.1
2769 Male, age 72, unknown 82.2
2823 Male, age 76, right hemisphere 82.2
1904 Male, age 53, unknown 81.3
1954 Female, age 42, unknown 77.9
Substantia nigra
nTPM: 104.8
1851 Male, age 51, unknown 122.5
1916 Female, age 42, unknown 119.0
1889 Female, age 72, unknown 117.4
2241 Male, age 72, unknown 113.2
1941 Male, age 53, unknown 109.7
2665 Male, age 74, both hemispheres 109.0
2409 Female, age 72, unknown 101.2
2590 Female, age 75, unknown 89.5
2699 Male, age 18, unknown 89.0
2583 Male, age 75, right hemisphere 77.9
Superior colliculus
nTPM: 86.2
1796 Male, age 53, unknown 100.7
1895 Male, age 76, right hemisphere 97.5
2668 Female, age 75, unknown 96.1
2087 Female, age 72, unknown 93.4
2261 Male, age 18, unknown 86.4
2587 Male, age 74, left hemisphere 83.5
2664 Male, age 75, both hemispheres 80.7
1839 Male, age 51, unknown 77.3
1913 Female, age 42, unknown 76.2
1995 Male, age 72, unknown 69.8
Ventral tegmental area
nTPM: 93.8
2410 Female, age 72, unknown 113.8
1915 Female, age 42, unknown 108.9
2223 Female, age 72, unknown 99.4
2218 Male, age 76, both hemispheres 89.7
1942 Male, age 51, unknown 80.6
2021 Male, age 53, unknown 70.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 300.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 300.6
Samples: 183

Max nTPM: 741.0
Min nTPM: 125.5
Std nTPM: 103.0
Median nTPM: 281.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 741.0
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 681.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 604.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 539.0
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 520.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 511.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 511.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 509.4
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 508.7
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 502.2
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 493.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 129.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 129.1
FF:10158-103A5 76 years, female 129.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 15.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 13.3
Samples: 4

Max nTPM: 15.6
Min nTPM: 12.0
Sample A Female 15.6
Sample B Female 12.4
Sample C Male 13.1
Sample D Male 12.0
Midbrain
nTPM: 14.3
Samples: 4

Max nTPM: 16.4
Min nTPM: 13.2
Sample A Female 13.3
Sample B Female 13.2
Sample C Male 16.4
Sample D Male 14.1
Periaqueductal gray
nTPM: 11.7
Samples: 3

Max nTPM: 11.9
Min nTPM: 11.3
Sample B Female 11.9
Sample C Male 11.8
Sample D Male 11.3
Superior colliculi
nTPM: 15.4
Samples: 4

Max nTPM: 18.6
Min nTPM: 12.8
Sample A Female 15.4
Sample B Female 14.6
Sample C Male 18.6
Sample D Male 12.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 915.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 915.8
Samples: 4

Max nTPM: 977.0
Min nTPM: 868.3
Sample A Male 934.2
Sample B Male 868.3
Sample C Female 883.7
Sample D Female 977.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.6
69116709 Antisense, RP_050321_01_A05, Mouse strain C57BL/6J (56 days, male) 2.6

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