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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:295.6 nTPM
HPA Brain:66.7 nTPM
GTEx:295.6 nTPM
FANTOM5:328.9 Scaled Tags Per Million
Pig:71.5 nTPM
Mouse:339.3 nTPM
Allen mouse:19.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

66.7
Sample id Sample description nTPM
Amygdala
nTPM: 66.7
2814 Male, age 76, right hemisphere 85.0
2695 Female, age 67, right hemisphere 77.9
2514 Male, age 75, right hemisphere 62.5
1987 Female, age 91, left hemisphere 56.7
2517 Female, age 94, left hemisphere 51.5
Basal amygdala
nTPM: 52.3
2609 Male, age 75, right hemisphere 59.0
2827 Female, age 67, right hemisphere 59.0
1955 Male, age 76, both hemispheres 57.1
2685 Female, age 94, left hemisphere 50.7
2110 Male, age 80, left hemisphere 46.1
2243 Female, age 91, right hemisphere 41.7
Central amygdala
nTPM: 57.3
1905 Male, age 76, both hemispheres 70.9
2826 Female, age 94, left hemisphere 61.9
2515 Male, age 75, right hemisphere 57.0
2701 Female, age 91, right hemisphere 50.1
2239 Male, age 80, left hemisphere 46.4
Corticomedial amygdala
nTPM: 48.9
2428 Male, age 75, right hemisphere 55.1
2829 Male, age 80, left hemisphere 53.3
2429 Female, age 94, left hemisphere 52.4
2240 Male, age 76, both hemispheres 49.9
2242 Female, age 91, right hemisphere 47.9
2535 Female, age 67, right hemisphere 34.7
Lateral amygdala
nTPM: 53.6
1883 Male, age 76, both hemispheres 72.8
2830 Female, age 67, right hemisphere 68.6
2516 Male, age 75, right hemisphere 59.2
2534 Female, age 94, left hemisphere 44.7
2256 Male, age 80, left hemisphere 41.3
2255 Female, age 91, right hemisphere 34.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

295.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 295.6
Samples: 181

Max nTPM: 1021.2
Min nTPM: 155.7
Std nTPM: 100.6
Median nTPM: 278.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1021.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 711.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 669.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 597.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 534.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 527.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 488.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 484.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 471.5
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 461.8
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 448.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 444.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 416.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 414.7
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 397.2
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 384.9
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 378.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 377.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 375.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 374.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 373.4
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 372.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 368.9
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 366.8
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 362.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 362.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 352.0
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 349.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 348.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 347.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 346.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 346.4
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 346.3
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 343.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 343.0
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 341.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 337.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 336.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 336.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 335.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 334.4
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 332.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 332.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 332.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 332.2
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 330.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 329.0
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 328.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 326.8
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 324.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 324.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 324.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 323.9
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 323.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 323.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 322.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 319.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 317.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 316.4
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 315.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 314.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 311.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 310.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 310.5
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 308.9
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 306.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 305.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 305.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 304.0
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 302.3
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 298.9
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 298.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 298.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 297.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 296.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 296.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 296.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 294.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 290.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 289.5
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 289.2
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 285.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 285.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 285.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 285.0
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 282.6
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 281.5
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 281.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 281.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 278.4
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 278.4
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 278.3
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 276.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 275.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 274.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 273.5
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 273.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 273.1
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 272.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 271.5
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 269.0
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 267.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 267.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 267.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 266.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 266.0
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 265.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 264.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 262.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 259.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 259.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 258.8
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 258.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 256.4
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 255.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 255.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 254.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 253.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 253.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 252.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 251.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 250.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 249.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 248.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 248.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 244.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 243.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 241.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 240.1
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 240.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 239.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 237.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 234.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 234.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 234.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 232.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 232.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 230.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 229.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 228.9
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 228.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 228.5
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 227.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 226.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 226.4
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 224.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 223.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 223.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 222.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 221.4
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 219.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 217.8
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 217.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 217.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 216.8
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 216.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 216.2
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 214.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 213.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 212.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 208.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 208.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 206.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 205.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 204.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 204.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 203.6
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 201.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 196.5
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 194.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 192.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 190.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 179.8
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 177.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 176.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 175.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 172.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 164.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 163.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 159.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 155.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

328.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 328.9
FF:10151-102I7 76 years, female 328.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

71.5
Pig sample Sample description nTPM
Amygdala
nTPM: 71.5
Samples: 4

Max nTPM: 96.0
Min nTPM: 55.7
Sample A Female 96.0
Sample B Female 73.0
Sample C Male 55.7
Sample D Male 61.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

339.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 339.3
Samples: 4

Max nTPM: 354.1
Min nTPM: 327.1
Sample A Male 327.1
Sample B Male 334.1
Sample C Female 354.1
Sample D Female 341.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

19.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 19.5
293241 Antisense, RP_040609_01_G11, Mouse strain C57BL/6J (56 days, male) 19.5
323595 Antisense, RP_040609_01_G11, Mouse strain C57BL/6J (56 days, male) 8.8

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