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RPL30
HPA
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  • SUMMARY

  • TISSUE

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • RPL30
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:1036.3 nTPM
FANTOM5:297.3 Scaled Tags Per Million
Pig:84.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA002651
Glial cells Not detected
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1036.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1036.3
Samples: 300

Max nTPM: 3838.2
Min nTPM: 548.6
Std nTPM: 327.6
Median nTPM: 960.5
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 3838.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 2545.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 2306.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1931.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1886.3
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 1850.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1832.6
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 1829.2
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 1821.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1767.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 1692.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1660.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1640.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1579.0
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 1550.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 1548.6
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 1519.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1516.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1505.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 1493.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1482.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1462.7
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 1444.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 1427.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1418.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1411.4
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 1405.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1396.4
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 1395.5
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 1368.2
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 1365.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 1350.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1346.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 1320.2
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 1318.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 1314.9
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 1302.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 1302.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 1301.1
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 1300.0
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 1299.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 1295.0
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 1292.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 1291.8
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 1286.3
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 1284.0
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 1277.9
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 1274.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 1272.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1269.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 1266.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1259.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1252.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 1246.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 1242.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 1241.8
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 1234.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1229.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 1229.5
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 1226.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 1223.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1218.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 1215.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 1212.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 1210.7
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 1210.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 1208.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1208.5
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 1206.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 1201.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 1197.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 1194.5
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 1194.1
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 1190.2
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 1175.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1172.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 1168.7
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 1167.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 1164.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 1162.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 1158.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 1157.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 1156.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 1155.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 1153.9
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 1152.1
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 1151.4
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 1151.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 1148.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 1146.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 1143.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1141.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 1137.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 1137.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1137.0
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 1136.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 1132.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 1128.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1119.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 1100.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 1099.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 1097.0
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 1096.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 1095.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 1095.6
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 1086.5
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 1085.1
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 1085.0
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 1081.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 1078.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 1077.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 1077.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 1071.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 1071.0
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 1069.6
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 1064.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1063.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 1062.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 1060.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 1056.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 1055.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 1055.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 1053.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 1049.1
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 1035.4
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 1033.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 1032.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 1029.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 1028.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 1027.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 1027.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 1023.5
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 1022.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 1022.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 1016.9
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 1010.7
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 1009.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1009.1
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 985.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 977.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 977.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 975.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 969.7
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 968.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 967.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 967.5
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 966.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 966.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 966.2
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 962.5
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 958.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 957.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 957.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 954.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 953.3
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 952.8
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 944.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 943.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 943.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 943.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 940.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 938.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 937.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 937.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 937.1
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 935.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 933.3
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 931.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 930.3
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 928.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 928.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 927.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 923.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 921.8
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 920.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 919.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 919.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 916.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 914.8
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 911.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 911.2
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 910.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 910.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 908.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 907.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 907.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 905.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 903.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 897.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 894.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 893.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 893.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 892.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 891.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 890.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 887.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 877.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 877.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 875.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 875.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 874.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 870.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 870.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 869.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 869.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 869.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 866.4
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 861.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 859.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 858.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 856.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 853.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 853.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 853.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 852.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 850.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 848.3
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 845.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 841.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 840.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 839.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 837.9
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 834.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 830.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 828.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 828.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 825.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 825.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 823.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 822.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 822.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 821.2
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 819.9
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 816.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 816.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 815.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 814.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 811.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 810.3
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 809.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 807.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 806.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 794.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 790.9
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 785.1
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 784.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 783.7
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 781.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 779.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 772.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 771.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 771.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 768.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 761.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 751.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 750.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 748.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 748.0
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 746.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 744.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 744.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 742.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 740.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 739.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 737.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 736.1
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 734.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 731.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 730.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 726.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 725.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 725.1
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 720.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 710.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 706.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 704.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 701.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 699.8
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 696.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 695.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 693.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 682.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 679.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 679.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 678.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 666.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 663.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 659.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 658.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 655.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 650.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 638.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 635.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 627.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 617.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 615.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 614.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 613.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 572.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 548.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

297.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 297.3
FF:10164-103B2 76 years, female 297.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

84.2
Pig sample Sample description nTPM
Caudate
nTPM: 84.2
Samples: 4

Max nTPM: 93.8
Min nTPM: 69.5
Sample A Female 93.8
Sample B Female 93.2
Sample C Male 80.3
Sample D Male 69.5

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