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  • EIF4A2
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:250.9 nTPM
HPA Brain:197.8 nTPM
GTEx:250.9 nTPM
FANTOM5:556.7 Scaled Tags Per Million
Mouse:618.5 nTPM
Allen mouse:28.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

197.8
Sample id Sample description nTPM
Amygdala
nTPM: 197.8
2514 Male, age 75, right hemisphere 232.4
2814 Male, age 76, right hemisphere 201.9
1987 Female, age 91, left hemisphere 189.9
2517 Female, age 94, left hemisphere 186.8
2695 Female, age 67, right hemisphere 177.9
Basal amygdala
nTPM: 154.5
2609 Male, age 75, right hemisphere 180.0
2243 Female, age 91, right hemisphere 170.4
2110 Male, age 80, left hemisphere 167.0
1955 Male, age 76, both hemispheres 155.8
2685 Female, age 94, left hemisphere 141.3
2827 Female, age 67, right hemisphere 112.5
Central amygdala
nTPM: 177.6
2515 Male, age 75, right hemisphere 199.0
2826 Female, age 94, left hemisphere 191.1
1905 Male, age 76, both hemispheres 182.1
2239 Male, age 80, left hemisphere 166.2
2701 Female, age 91, right hemisphere 149.7
Corticomedial amygdala
nTPM: 177.7
2428 Male, age 75, right hemisphere 204.0
2829 Male, age 80, left hemisphere 194.2
2429 Female, age 94, left hemisphere 188.8
2242 Female, age 91, right hemisphere 183.6
2240 Male, age 76, both hemispheres 173.7
2535 Female, age 67, right hemisphere 122.1
Lateral amygdala
nTPM: 155.8
2516 Male, age 75, right hemisphere 204.8
2534 Female, age 94, left hemisphere 191.3
1883 Male, age 76, both hemispheres 169.6
2255 Female, age 91, right hemisphere 127.3
2256 Male, age 80, left hemisphere 122.1
2830 Female, age 67, right hemisphere 119.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

250.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 250.9
Samples: 181

Max nTPM: 679.0
Min nTPM: 71.3
Std nTPM: 95.3
Median nTPM: 233.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 679.0
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 538.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 517.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 479.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 467.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 466.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 465.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 464.8
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 453.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 444.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 431.1
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 387.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 375.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 374.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 373.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 373.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 372.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 369.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 367.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 365.6
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 361.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 353.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 351.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 351.3
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 350.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 346.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 344.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 343.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 343.3
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 335.1
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 334.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 331.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 330.4
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 327.2
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 325.6
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 321.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 319.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 319.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 319.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 319.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 317.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 316.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 316.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 314.8
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 314.2
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 313.0
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 309.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 306.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 306.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 304.7
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 304.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 304.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 302.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 301.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 299.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 294.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 292.6
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 292.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 292.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 290.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 290.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 284.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 280.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 277.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 276.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 274.5
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 268.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 266.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 263.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 262.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 262.0
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 259.8
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 259.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 258.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 255.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 254.8
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 250.2
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 249.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 247.1
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 245.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 243.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 241.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 240.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 238.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 238.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 236.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 235.9
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 235.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 233.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 233.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 233.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 233.0
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 228.7
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 226.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 226.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 224.5
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 223.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 222.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 222.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 221.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 220.9
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 220.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 217.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 217.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 215.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 215.0
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 213.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 213.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 213.0
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 212.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 212.3
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 211.6
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 209.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 207.6
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 207.6
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 205.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 204.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 204.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 203.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 202.7
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 202.6
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 202.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 202.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 198.1
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 197.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 195.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 194.9
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 193.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 190.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 189.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 188.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 188.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 186.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 185.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 184.2
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 181.7
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 179.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 179.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 177.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 175.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 173.9
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 172.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 169.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 166.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 164.3
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 164.3
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 163.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 161.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 161.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 161.1
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 159.8
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 158.9
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 157.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 157.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 156.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 155.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 154.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 154.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 153.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 152.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 151.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 151.5
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 145.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 144.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 142.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 139.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 138.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 137.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 136.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 131.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 127.9
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 127.1
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 125.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 119.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 118.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 117.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 112.8
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 112.8
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 104.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 104.5
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 71.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

556.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 556.7
FF:10151-102I7 76 years, female 556.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

618.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 618.5
Samples: 4

Max nTPM: 671.0
Min nTPM: 530.5
Sample A Male 671.0
Sample B Male 659.4
Sample C Female 530.5
Sample D Female 613.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

28.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 28.7
71381013 Antisense, RP_050428_02_F12, Mouse strain C57BL/6J (56 days, male) 28.7

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