MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:98.1 nTPM
HPA Brain:108.3 nTPM
GTEx:98.1 nTPM
FANTOM5:147.6 Scaled Tags Per Million
Pig:8.5 nTPM
Mouse:94.2 nTPM
Allen mouse:1.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 108.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 93.7
2666 Male, age 74, left hemisphere 109.0
2019 Male, age 18, unknown 102.7
2411 Female, age 72, unknown 95.9
1827 Male, age 72, unknown 94.4
2828 Female, age 72, unknown 91.9
1830 Male, age 51, unknown 91.6
1833 Male, age 53, unknown 91.3
1870 Female, age 42, unknown 90.1
2586 Male, age 75, left hemisphere 89.6
2219 Male, age 76, both hemispheres 80.2
Dorsal raphe nucleus
nTPM: 100.5
2298 Female, age 72, unknown 113.7
1828 Male, age 53, unknown 111.3
2047 Male, age 72, unknown 106.2
2750 Male, age 76, both hemispheres 86.0
2016 Female, age 72, unknown 85.2
Inferior colliculus
nTPM: 100.1
2849 Male, age 72, unknown 107.5
1890 Male, age 53, unknown 104.5
1848 Female, age 42, unknown 96.9
2097 Female, age 72, unknown 91.3
Median raphe nucleus
nTPM: 108.3
2220 Male, age 76, midline 108.3
Periaquaductal grey, anterior
nTPM: 103.9
2502 Female, age 75, unknown 120.2
1947 Male, age 18, unknown 102.3
1795 Male, age 51, unknown 89.1
Periaquaductal grey, dorsal
nTPM: 98.1
2850 Male, age 76, both hemispheres 133.0
2464 Female, age 72, unknown 93.4
1840 Male, age 53, unknown 89.6
1831 Male, age 72, unknown 76.4
Periaquaductal grey, lateral
nTPM: 106.8
2140 Male, age 76, both hemispheres 145.1
2272 Male, age 74, both hemispheres 94.3
2053 Male, age 18, unknown 80.9
Pretectal area
nTPM: 94.1
2667 Female, age 75, unknown 141.7
2224 Female, age 72, unknown 108.0
2007 Male, age 72, unknown 105.6
1817 Female, age 42, unknown 96.4
2316 Male, age 76, right hemisphere 93.6
2825 Male, age 18, unknown 88.3
1816 Male, age 51, unknown 87.7
1944 Female, age 72, unknown 82.4
2273 Male, age 74, both hemispheres 80.6
2407 Male, age 75, both hemispheres 76.8
1815 Male, age 53, unknown 74.5
Red nucleus
nTPM: 94.0
1865 Male, age 51, unknown 104.9
2785 Male, age 18, unknown 103.5
2227 Male, age 72, unknown 102.0
1954 Female, age 42, unknown 100.4
2769 Male, age 72, unknown 99.5
1904 Male, age 53, unknown 98.8
1821 Female, age 72, unknown 95.8
2588 Male, age 74, left hemisphere 92.7
2503 Female, age 72, unknown 90.6
2584 Male, age 75, left hemisphere 87.5
2823 Male, age 76, right hemisphere 79.6
2725 Female, age 75, unknown 72.2
Substantia nigra
nTPM: 97.0
2665 Male, age 74, both hemispheres 120.0
1916 Female, age 42, unknown 109.5
1851 Male, age 51, unknown 108.9
1941 Male, age 53, unknown 108.8
2699 Male, age 18, unknown 107.9
2241 Male, age 72, unknown 95.4
1889 Female, age 72, unknown 91.1
2583 Male, age 75, right hemisphere 81.1
2590 Female, age 75, unknown 78.0
2409 Female, age 72, unknown 69.8
Superior colliculus
nTPM: 86.5
2587 Male, age 74, left hemisphere 101.4
2087 Female, age 72, unknown 94.8
1895 Male, age 76, right hemisphere 92.9
1839 Male, age 51, unknown 90.5
2664 Male, age 75, both hemispheres 89.3
1796 Male, age 53, unknown 87.8
2261 Male, age 18, unknown 84.8
1913 Female, age 42, unknown 76.7
2668 Female, age 75, unknown 76.4
1995 Male, age 72, unknown 70.6
Ventral tegmental area
nTPM: 90.4
1915 Female, age 42, unknown 102.0
2218 Male, age 76, both hemispheres 99.0
2410 Female, age 72, unknown 91.7
2021 Male, age 53, unknown 85.5
1942 Male, age 51, unknown 83.6
2223 Female, age 72, unknown 80.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 98.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 98.1
Samples: 183

Max nTPM: 544.9
Min nTPM: 26.3
Std nTPM: 58.6
Median nTPM: 82.9
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 544.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 337.3
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 304.8
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 291.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 253.9
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 234.6
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 234.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 225.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 202.9
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 202.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 175.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 147.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 147.6
FF:10158-103A5 76 years, female 147.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 8.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 8.5
Samples: 4

Max nTPM: 10.7
Min nTPM: 6.5
Sample A Female 6.8
Sample B Female 9.9
Sample C Male 6.5
Sample D Male 10.7
Midbrain
nTPM: 5.7
Samples: 4

Max nTPM: 7.6
Min nTPM: 4.0
Sample A Female 6.8
Sample B Female 7.6
Sample C Male 4.0
Sample D Male 4.4
Periaqueductal gray
nTPM: 7.5
Samples: 3

Max nTPM: 8.6
Min nTPM: 6.4
Sample B Female 8.6
Sample C Male 6.4
Sample D Male 7.6
Superior colliculi
nTPM: 5.2
Samples: 4

Max nTPM: 6.7
Min nTPM: 3.5
Sample A Female 5.5
Sample B Female 6.7
Sample C Male 3.5
Sample D Male 5.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 94.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 94.2
Samples: 4

Max nTPM: 125.6
Min nTPM: 70.4
Sample A Male 75.9
Sample B Male 70.4
Sample C Female 125.6
Sample D Female 104.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
71789724 Antisense, RP_050921_01_H04, Mouse strain C57BL/6J (56 days, male) 1.2
74581366 Antisense, RP_050921_01_H04, Mouse strain C57BL/6J (56 days, male) 0.3

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