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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
21.2
Sample id
Sample description
nTPM
Amygdala nTPM: 17.2
1987
Female, age 91, left hemisphere
21.1
2517
Female, age 94, left hemisphere
17.6
2514
Male, age 75, right hemisphere
16.7
2695
Female, age 67, right hemisphere
15.6
2814
Male, age 76, right hemisphere
15.2
Basal amygdala nTPM: 20.7
2243
Female, age 91, right hemisphere
23.7
2685
Female, age 94, left hemisphere
22.6
2609
Male, age 75, right hemisphere
22.2
2827
Female, age 67, right hemisphere
21.2
1955
Male, age 76, both hemispheres
17.6
2110
Male, age 80, left hemisphere
17.0
Central amygdala nTPM: 21.2
2826
Female, age 94, left hemisphere
29.5
2515
Male, age 75, right hemisphere
22.2
2239
Male, age 80, left hemisphere
20.3
2701
Female, age 91, right hemisphere
17.7
1905
Male, age 76, both hemispheres
16.3
Corticomedial amygdala nTPM: 19.7
2829
Male, age 80, left hemisphere
24.0
2428
Male, age 75, right hemisphere
22.0
2242
Female, age 91, right hemisphere
21.9
2535
Female, age 67, right hemisphere
19.2
2429
Female, age 94, left hemisphere
17.6
2240
Male, age 76, both hemispheres
13.6
Lateral amygdala nTPM: 20.4
2534
Female, age 94, left hemisphere
29.1
2255
Female, age 91, right hemisphere
20.2
1883
Male, age 76, both hemispheres
19.7
2256
Male, age 80, left hemisphere
19.4
2516
Male, age 75, right hemisphere
17.3
2830
Female, age 67, right hemisphere
16.9
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
26.6
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 26.6
Samples: 181
Max nTPM: 66.6
Min nTPM: 8.3
Std nTPM: 8.9
Median nTPM: 26.8
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
66.6
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
54.8
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
52.7
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
48.7
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
46.7
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
45.9
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
44.3
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
42.6
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
41.4
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
39.8
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
39.7
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
39.0
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
38.4
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
38.3
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
37.7
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
37.3
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
37.2
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
37.0
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
36.9
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
36.7
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
36.4
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
36.2
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
35.9
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
35.4
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
35.3
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
35.2
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
35.1
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
35.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
34.9
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
34.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
34.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
34.6
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
34.4
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
34.3
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
34.0
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
33.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
33.9
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
33.9
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
33.7
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
33.7
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
33.7
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
33.5
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
33.5
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
32.7
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
32.5
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
32.5
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
32.5
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
32.4
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
32.3
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
32.1
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
32.1
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
31.8
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
31.8
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
31.5
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
30.9
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
30.5
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
30.4
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
30.3
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
30.2
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
30.2
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
30.1
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
30.1
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
30.1
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
29.9
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
29.4
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
29.3
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
29.0
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
28.9
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
28.9
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
28.7
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
28.6
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
28.2
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
28.1
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
28.0
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
28.0
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
28.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
27.9
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
27.8
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
27.7
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
27.7
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
27.7
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
27.6
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
27.5
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
27.5
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
27.3
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
27.2
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
27.1
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
26.9
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
26.9
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
26.8
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
26.8
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
26.5
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
26.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
26.2
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
26.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
25.9
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
25.6
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
25.6
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
25.4
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
24.7
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
24.7
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
24.6
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
24.3
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
24.3
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
24.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
23.9
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
23.3
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
23.3
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
23.1
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
23.1
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
22.9
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
22.8
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
22.4
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
22.2
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
22.2
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
21.8
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
21.6
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
21.5
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
21.4
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
21.3
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
21.3
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
21.0
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
21.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
20.8
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
20.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
20.6
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
20.5
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
20.4
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
20.4
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
20.2
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
20.1
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
19.9
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
19.9
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
19.8
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
19.8
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
19.7
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
19.7
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
19.3
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
19.1
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
19.1
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
19.1
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
19.0
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
19.0
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
18.9
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
18.8
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
18.8
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
18.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
18.1
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
18.0
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
18.0
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
17.9
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
17.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
17.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
17.3
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
17.1
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
17.1
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
17.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
16.9
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
16.9
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
16.9
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
16.7
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
16.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
16.4
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
16.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
16.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
16.0
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
15.9
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
15.9
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
15.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
15.3
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
15.2
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
14.6
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
14.6
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
14.6
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
13.8
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
13.6
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
12.6
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
10.9
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
9.8
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
9.7
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
8.3
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
58.4
Pig sample
Sample description
nTPM
Amygdala nTPM: 58.4
Samples: 4
Max nTPM: 73.1
Min nTPM: 46.7
Sample A
Female
73.1
Sample B
Female
52.5
Sample C
Male
61.2
Sample D
Male
46.7
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
139.3
Mouse sample
Sample description
nTPM
Amygdala nTPM: 139.3
Samples: 4
Max nTPM: 155.0
Min nTPM: 130.0
Sample A
Male
134.2
Sample B
Male
138.0
Sample C
Female
155.0
Sample D
Female
130.0
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
