MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.5 nTPM
HPA Brain:1.4 nTPM
GTEx:9.5 nTPM
FANTOM5:13.1 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 1.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1.1
2586 Male, age 75, left hemisphere 2.0
2666 Male, age 74, left hemisphere 1.5
2828 Female, age 72, unknown 1.2
2411 Female, age 72, unknown 1.1
1833 Male, age 53, unknown 1.0
2019 Male, age 18, unknown 0.9
1870 Female, age 42, unknown 0.8
2219 Male, age 76, both hemispheres 0.8
1827 Male, age 72, unknown 0.7
1830 Male, age 51, unknown 0.7
Dorsal raphe nucleus
nTPM: 1.0
2016 Female, age 72, unknown 1.1
2750 Male, age 76, both hemispheres 1.1
1828 Male, age 53, unknown 1.0
2047 Male, age 72, unknown 0.9
2298 Female, age 72, unknown 0.7
Inferior colliculus
nTPM: 0.6
1848 Female, age 42, unknown 0.8
1890 Male, age 53, unknown 0.8
2097 Female, age 72, unknown 0.5
2849 Male, age 72, unknown 0.5
Median raphe nucleus
nTPM: 0.9
2220 Male, age 76, midline 0.9
Periaquaductal grey, anterior
nTPM: 1.2
1947 Male, age 18, unknown 1.3
2502 Female, age 75, unknown 1.2
1795 Male, age 51, unknown 1.1
Periaquaductal grey, dorsal
nTPM: 0.8
1831 Male, age 72, unknown 1.3
1840 Male, age 53, unknown 0.8
2464 Female, age 72, unknown 0.6
2850 Male, age 76, both hemispheres 0.6
Periaquaductal grey, lateral
nTPM: 1.0
2053 Male, age 18, unknown 1.3
2140 Male, age 76, both hemispheres 0.9
2272 Male, age 74, both hemispheres 0.8
Pretectal area
nTPM: 0.9
2007 Male, age 72, unknown 1.3
1815 Male, age 53, unknown 1.1
1817 Female, age 42, unknown 1.1
2316 Male, age 76, right hemisphere 1.0
2667 Female, age 75, unknown 1.0
2273 Male, age 74, both hemispheres 0.9
2825 Male, age 18, unknown 0.9
2224 Female, age 72, unknown 0.8
1816 Male, age 51, unknown 0.7
1944 Female, age 72, unknown 0.7
2407 Male, age 75, both hemispheres 0.6
Red nucleus
nTPM: 1.3
2588 Male, age 74, left hemisphere 2.8
2584 Male, age 75, left hemisphere 2.4
2785 Male, age 18, unknown 1.7
1904 Male, age 53, unknown 1.6
2769 Male, age 72, unknown 1.4
2227 Male, age 72, unknown 1.2
1821 Female, age 72, unknown 1.1
1865 Male, age 51, unknown 1.1
1954 Female, age 42, unknown 0.8
2503 Female, age 72, unknown 0.8
2823 Male, age 76, right hemisphere 0.7
2725 Female, age 75, unknown 0.6
Substantia nigra
nTPM: 1.4
2409 Female, age 72, unknown 2.9
2583 Male, age 75, right hemisphere 2.4
1916 Female, age 42, unknown 1.7
2590 Female, age 75, unknown 1.5
2665 Male, age 74, both hemispheres 1.2
1851 Male, age 51, unknown 0.9
1941 Male, age 53, unknown 0.9
2699 Male, age 18, unknown 0.9
2241 Male, age 72, unknown 0.8
1889 Female, age 72, unknown 0.7
Superior colliculus
nTPM: 0.9
2668 Female, age 75, unknown 1.3
1796 Male, age 53, unknown 1.2
1895 Male, age 76, right hemisphere 1.1
1995 Male, age 72, unknown 1.1
2087 Female, age 72, unknown 1.1
2664 Male, age 75, both hemispheres 1.0
1913 Female, age 42, unknown 0.8
2261 Male, age 18, unknown 0.8
1839 Male, age 51, unknown 0.7
2587 Male, age 74, left hemisphere 0.4
Ventral tegmental area
nTPM: 1.4
1942 Male, age 51, unknown 3.7
2223 Female, age 72, unknown 1.5
2410 Female, age 72, unknown 0.9
1915 Female, age 42, unknown 0.8
2021 Male, age 53, unknown 0.8
2218 Male, age 76, both hemispheres 0.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 9.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.5
Samples: 183

Max nTPM: 43.7
Min nTPM: 2.1
Std nTPM: 4.9
Median nTPM: 8.8
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 43.7
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 39.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 21.6
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 21.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 19.9
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 18.8
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 17.9
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 17.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 17.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 16.7
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 16.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 13.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 13.1
FF:10158-103A5 76 years, female 13.1

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