MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.6 nTPM
HPA Brain:34.3 nTPM
GTEx:24.6 nTPM
FANTOM5:60.5 Scaled Tags Per Million
Pig:12.4 nTPM
Mouse:2.4 nTPM
Allen mouse:0.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 34.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.9
2019 Male, age 18, unknown 34.3
1830 Male, age 51, unknown 34.0
2411 Female, age 72, unknown 31.2
1870 Female, age 42, unknown 30.2
1833 Male, age 53, unknown 28.7
2219 Male, age 76, both hemispheres 22.7
2586 Male, age 75, left hemisphere 22.7
2828 Female, age 72, unknown 21.6
2666 Male, age 74, left hemisphere 19.3
1827 Male, age 72, unknown 14.3
Dorsal raphe nucleus
nTPM: 16.9
2750 Male, age 76, both hemispheres 34.2
1828 Male, age 53, unknown 16.9
2016 Female, age 72, unknown 15.4
2047 Male, age 72, unknown 11.0
2298 Female, age 72, unknown 6.9
Inferior colliculus
nTPM: 13.6
1890 Male, age 53, unknown 17.3
1848 Female, age 42, unknown 14.8
2849 Male, age 72, unknown 12.6
2097 Female, age 72, unknown 9.7
Median raphe nucleus
nTPM: 17.6
2220 Male, age 76, midline 17.6
Periaquaductal grey, anterior
nTPM: 11.5
2502 Female, age 75, unknown 12.8
1947 Male, age 18, unknown 11.6
1795 Male, age 51, unknown 10.0
Periaquaductal grey, dorsal
nTPM: 9.9
2464 Female, age 72, unknown 13.6
1831 Male, age 72, unknown 12.4
2850 Male, age 76, both hemispheres 8.6
1840 Male, age 53, unknown 4.8
Periaquaductal grey, lateral
nTPM: 11.5
2272 Male, age 74, both hemispheres 13.6
2053 Male, age 18, unknown 13.5
2140 Male, age 76, both hemispheres 7.5
Pretectal area
nTPM: 13.3
2407 Male, age 75, both hemispheres 19.3
2316 Male, age 76, right hemisphere 18.7
1815 Male, age 53, unknown 17.8
2825 Male, age 18, unknown 15.4
2007 Male, age 72, unknown 14.4
1817 Female, age 42, unknown 13.7
2273 Male, age 74, both hemispheres 11.8
2667 Female, age 75, unknown 11.3
2224 Female, age 72, unknown 9.0
1944 Female, age 72, unknown 7.9
1816 Male, age 51, unknown 7.0
Red nucleus
nTPM: 34.3
1865 Male, age 51, unknown 43.1
1904 Male, age 53, unknown 40.2
1821 Female, age 72, unknown 38.5
2227 Male, age 72, unknown 38.1
2823 Male, age 76, right hemisphere 37.8
2769 Male, age 72, unknown 37.7
2785 Male, age 18, unknown 35.3
2588 Male, age 74, left hemisphere 32.8
2503 Female, age 72, unknown 30.3
2584 Male, age 75, left hemisphere 28.8
1954 Female, age 42, unknown 27.6
2725 Female, age 75, unknown 21.9
Substantia nigra
nTPM: 17.0
2583 Male, age 75, right hemisphere 23.8
1851 Male, age 51, unknown 20.8
2590 Female, age 75, unknown 19.1
1889 Female, age 72, unknown 18.6
1941 Male, age 53, unknown 17.1
2409 Female, age 72, unknown 16.3
2699 Male, age 18, unknown 16.2
2241 Male, age 72, unknown 14.8
1916 Female, age 42, unknown 12.4
2665 Male, age 74, both hemispheres 11.4
Superior colliculus
nTPM: 18.5
1913 Female, age 42, unknown 31.5
1995 Male, age 72, unknown 25.2
2668 Female, age 75, unknown 23.3
2587 Male, age 74, left hemisphere 22.1
1839 Male, age 51, unknown 18.8
1895 Male, age 76, right hemisphere 18.8
1796 Male, age 53, unknown 13.7
2664 Male, age 75, both hemispheres 12.8
2087 Female, age 72, unknown 10.2
2261 Male, age 18, unknown 8.1
Ventral tegmental area
nTPM: 22.8
2223 Female, age 72, unknown 44.6
2410 Female, age 72, unknown 25.1
2218 Male, age 76, both hemispheres 17.9
1942 Male, age 51, unknown 17.7
2021 Male, age 53, unknown 16.5
1915 Female, age 42, unknown 15.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 24.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.6
Samples: 183

Max nTPM: 152.9
Min nTPM: 2.3
Std nTPM: 18.1
Median nTPM: 21.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 152.9
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 98.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 87.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 86.4
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 83.6
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 62.5
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 62.0
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 58.3
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 58.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 58.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 51.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 60.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 60.5
FF:10158-103A5 76 years, female 60.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 12.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 12.3
Samples: 4

Max nTPM: 18.8
Min nTPM: 9.0
Sample A Female 9.0
Sample B Female 10.4
Sample C Male 11.1
Sample D Male 18.8
Midbrain
nTPM: 11.8
Samples: 4

Max nTPM: 21.1
Min nTPM: 7.5
Sample A Female 21.1
Sample B Female 11.0
Sample C Male 7.6
Sample D Male 7.5
Periaqueductal gray
nTPM: 8.2
Samples: 3

Max nTPM: 9.7
Min nTPM: 6.8
Sample B Female 9.7
Sample C Male 6.8
Sample D Male 8.0
Superior colliculi
nTPM: 10.4
Samples: 4

Max nTPM: 11.7
Min nTPM: 8.0
Sample A Female 8.0
Sample B Female 10.4
Sample C Male 11.4
Sample D Male 11.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 2.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.4
Samples: 4

Max nTPM: 2.7
Min nTPM: 2.2
Sample A Male 2.2
Sample B Male 2.2
Sample C Female 2.6
Sample D Female 2.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
2011 Antisense, RP_040507_02_F06, Mouse strain C57BL/6J (56 days, male) 0.2
2010 Antisense, RP_040507_02_F06, Mouse strain C57BL/6J (56 days, male) 0.1

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