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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
199.8
nTPM
Monaco:
585.9
nTPM
Schmiedel:
1139.5
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
199.8
HPA sample
nTPM
gdT-cell nTPM: 199.8
Samples: 6
Max nTPM: 367.1
Min nTPM: 73.8
P10809_1007
95.4
P10809_1022
367.1
P10809_1041
344.4
P10809_1060
73.8
P10809_1077
152.5
P10809_1098
165.6
MAIT T-cell nTPM: 95.6
Samples: 6
Max nTPM: 212.0
Min nTPM: 27.7
P10809_1006
74.6
P10809_1024
27.7
P10809_1043
212.0
P10809_1062
43.3
P10809_1083
61.9
P10809_1097
154.3
Memory CD4 T-cell nTPM: 46.8
Samples: 6
Max nTPM: 134.7
Min nTPM: 3.3
P10809_1014
22.9
P10809_1026
31.0
P10809_1045
74.1
P10809_1064
134.7
P10809_1086
15.0
P10809_1113
3.3
Memory CD8 T-cell nTPM: 176.2
Samples: 5
Max nTPM: 377.9
Min nTPM: 72.1
P10809_1012
72.1
P10809_1027
79.0
P10809_1046
377.9
P10809_1065
162.5
P10809_1111
189.6
Naive CD4 T-cell nTPM: 32.1
Samples: 6
Max nTPM: 47.5
Min nTPM: 16.7
P10809_1015
16.7
P10809_1030
32.8
P10809_1049
35.8
P10809_1068
47.5
P10809_1085
35.4
P10809_1112
24.3
Naive CD8 T-cell nTPM: 99.6
Samples: 6
Max nTPM: 178.7
Min nTPM: 18.3
P10809_1016
30.8
P10809_1031
132.1
P10809_1050
165.4
P10809_1069
178.7
P10809_1087
18.3
P10809_1110
72.0
T-reg nTPM: 16.1
Samples: 6
Max nTPM: 29.6
Min nTPM: 8.6
P10809_1018
8.9
P10809_1037
29.6
P10809_1056
14.2
P10809_1075
16.1
P10809_1094
8.6
P10809_1106
19.1
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
585.9
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 357.7
Samples: 4
Max nTPM: 713.0
Min nTPM: 30.4
RHH5202_R3573
34.7
RHH5230_R3602
713.0
RHH5259_R3631
652.5
RHH5288_R3660
30.4
Effector memory CD8 T-cell nTPM: 557.0
Samples: 4
Max nTPM: 1174.4
Min nTPM: 39.7
RHH5203_R3574
122.6
RHH5231_R3603
891.2
RHH5260_R3632
1174.4
RHH5289_R3661
39.7
MAIT T-cell nTPM: 395.4
Samples: 4
Max nTPM: 1130.8
Min nTPM: 47.9
RHH5233_R3605
47.9
RHH5205_R3576
237.7
RHH5262_R3634
1130.8
RHH5297_R3663
165.0
Memory CD4 T-cell TFH nTPM: 88.2
Samples: 4
Max nTPM: 165.2
Min nTPM: 13.8
RHH5300_R3666
165.2
RHH5236_R3608
159.9
RHH5265_R3637
13.9
RHH5208_R3579
13.8
Memory CD4 T-cell Th1 nTPM: 132.8
Samples: 4
Max nTPM: 301.4
Min nTPM: 21.3
RHH5210_R3581
21.3
RHH5302_R3668
23.6
RHH5238_R3610
185.0
RHH5267_R3639
301.4
Memory CD4 T-cell Th1/Th17 nTPM: 228.5
Samples: 4
Max nTPM: 600.5
Min nTPM: 15.7
RHH5303_R3669
15.7
RHH5211_R3582
600.5
RHH5239_R3611
21.8
RHH5268_R3640
276.0
Memory CD4 T-cell Th17 nTPM: 105.9
Samples: 4
Max nTPM: 311.0
Min nTPM: 2.1
RHH5304_R3670
8.7
RHH5212_R3583
311.0
RHH5240_R3612
2.1
RHH5269_R3641
101.8
Memory CD4 T-cell Th2 nTPM: 127.3
Samples: 4
Max nTPM: 244.3
Min nTPM: 9.5
RHH5305_R3671
58.0
RHH5213_R3584
244.3
RHH5241_R3613
9.5
RHH5270_R3642
197.5
Naive CD4 T-cell nTPM: 101.6
Samples: 4
Max nTPM: 210.9
Min nTPM: 1.8
RHH5306_R3672
122.9
RHH5214_R3585
210.9
RHH5242_R3614
1.8
RHH5271_R3643
70.7
Naive CD8 T-cell nTPM: 43.7
Samples: 4
Max nTPM: 86.4
Min nTPM: 6.7
RHH5201_R3572
6.7
RHH5229_R3601
61.1
RHH5258_R3630
86.4
RHH5287_R3659
20.5
Non-Vd2 gdTCR nTPM: 574.4
Samples: 4
Max nTPM: 1428.4
Min nTPM: 71.3
RHH5235_R3607
1428.4
RHH5264_R3636
71.3
RHH5207_R3578
78.9
RHH5299_R3665
718.8
T-reg nTPM: 212.2
Samples: 4
Max nTPM: 349.6
Min nTPM: 112.2
RHH5301_R3667
171.4
RHH5237_R3609
112.2
RHH5266_R3638
215.5
RHH5209_R3580
349.6
Terminal effector memory CD4 T-cell nTPM: 194.9
Samples: 2
Max nTPM: 357.4
Min nTPM: 32.4
RHH5243_R3615
357.4
RHH5272_R3644
32.4
Terminal effector memory CD8 T-cell nTPM: 264.6
Samples: 4
Max nTPM: 588.0
Min nTPM: 38.1
RHH5232_R3604
38.1
RHH5204_R3575
392.9
RHH5261_R3633
588.0
RHH5296_R3662
39.4
Vd2 gdTCR nTPM: 585.9
Samples: 4
Max nTPM: 1537.1
Min nTPM: 161.2
RHH5234_R3606
441.4
RHH5206_R3577
161.2
RHH5263_R3635
204.0
RHH5298_R3664
1537.1
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
