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  • TPRG1L
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Mouse brain, Intensity
Amygdalai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity.

123.826
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:73.5 nTPM
HPA Brain:93.0 nTPM
GTEx:73.5 nTPM
FANTOM5:69.9 Scaled Tags Per Million
Pig:73.0 nTPM
Mouse:153.9 nTPM
Allen mouse:15.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity.

, antibody CAB079051
Amygdala mean intensity 123.826
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity.

FRONT BACK
Nucleus of the lateral olfactory tract 119.564
Basal medial amygdaloid nucleus 91.361
Basal lateral amygdala* -
Basal lateral amygdaloid nucleus 91.126
Cortical amygdala 111.243
Central amygdala 97.052
Medial amygdaloid nucleus 91.880

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

93.0
Sample id Sample description nTPM
Amygdala
nTPM: 77.1
2814 Male, age 76, right hemisphere 89.6
2517 Female, age 94, left hemisphere 82.0
1987 Female, age 91, left hemisphere 81.6
2514 Male, age 75, right hemisphere 72.3
2695 Female, age 67, right hemisphere 59.9
Basal amygdala
nTPM: 93.0
2243 Female, age 91, right hemisphere 103.9
2110 Male, age 80, left hemisphere 101.2
2685 Female, age 94, left hemisphere 100.3
2609 Male, age 75, right hemisphere 89.9
1955 Male, age 76, both hemispheres 82.4
2827 Female, age 67, right hemisphere 80.5
Central amygdala
nTPM: 93.0
2826 Female, age 94, left hemisphere 116.9
2515 Male, age 75, right hemisphere 92.1
2239 Male, age 80, left hemisphere 91.6
1905 Male, age 76, both hemispheres 87.0
2701 Female, age 91, right hemisphere 77.4
Corticomedial amygdala
nTPM: 86.9
2829 Male, age 80, left hemisphere 103.4
2242 Female, age 91, right hemisphere 93.7
2428 Male, age 75, right hemisphere 87.6
2429 Female, age 94, left hemisphere 83.2
2240 Male, age 76, both hemispheres 78.3
2535 Female, age 67, right hemisphere 75.3
Lateral amygdala
nTPM: 90.6
2534 Female, age 94, left hemisphere 127.4
1883 Male, age 76, both hemispheres 97.8
2256 Male, age 80, left hemisphere 82.1
2516 Male, age 75, right hemisphere 80.5
2830 Female, age 67, right hemisphere 78.5
2255 Female, age 91, right hemisphere 77.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

73.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 73.5
Samples: 181

Max nTPM: 201.2
Min nTPM: 28.1
Std nTPM: 29.0
Median nTPM: 69.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 201.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 165.7
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 151.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 150.5
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 145.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 142.8
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 139.8
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 138.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 134.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 131.1
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 122.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 117.4
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 113.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 113.3
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 112.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 111.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 111.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 109.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 108.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 107.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 106.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 106.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 105.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 104.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 103.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 100.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 100.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 100.0
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 99.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 99.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 99.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 99.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 98.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 98.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 97.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 95.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 95.2
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 95.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 94.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 94.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 94.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 93.3
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 91.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 91.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 90.5
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 89.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 89.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 88.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 88.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 88.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 88.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 87.4
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 86.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 86.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 85.8
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 85.5
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 84.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 84.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 83.9
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 83.1
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 82.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 82.2
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 81.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 81.6
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 81.4
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 80.9
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 80.6
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 80.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 80.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 80.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 79.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 79.3
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 79.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 78.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 77.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 76.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 75.4
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 74.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 74.7
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 74.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 74.1
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 73.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 73.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 73.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 73.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 73.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 72.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 72.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 71.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 71.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 69.8
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 68.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 68.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 68.1
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 68.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 66.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 66.5
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 64.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 63.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 62.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 61.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 61.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 61.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 60.9
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 60.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 59.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 59.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 59.3
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 58.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 58.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 58.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 58.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 58.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 57.9
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 57.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 57.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 57.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 56.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 56.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 56.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 56.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 55.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 55.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 54.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 54.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 54.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 54.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 53.9
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 53.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 53.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 53.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 52.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 51.8
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 51.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 51.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 51.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 51.4
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 51.2
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 50.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 50.3
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 49.8
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 49.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 49.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 48.9
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 48.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 48.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 48.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 47.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 47.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 47.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 46.4
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 45.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 44.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 44.2
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 44.2
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 43.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 43.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 42.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 42.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 42.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 42.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 41.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 41.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 41.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 40.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 39.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 39.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 39.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 37.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 37.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 37.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 37.4
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 37.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 37.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 37.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 36.7
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 36.5
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 35.2
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 33.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 28.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 28.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

69.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 69.9
FF:10151-102I7 76 years, female 69.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

73.0
Pig sample Sample description nTPM
Amygdala
nTPM: 73.0
Samples: 4

Max nTPM: 104.5
Min nTPM: 59.5
Sample A Female 104.5
Sample B Female 60.8
Sample C Male 67.3
Sample D Male 59.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

153.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 153.9
Samples: 4

Max nTPM: 161.3
Min nTPM: 149.6
Sample A Male 152.7
Sample B Male 149.6
Sample C Female 161.3
Sample D Female 152.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

15.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 15.1
69080068 Antisense, RP_050324_01_H07, Mouse strain C57BL/6J (56 days, male) 15.1

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