MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:106.8 nTPM
HPA Brain:225.0 nTPM
GTEx:106.8 nTPM
FANTOM5:84.2 Scaled Tags Per Million
Pig:196.6 nTPM
Mouse:53.1 nTPM
Allen mouse:3.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 225.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 171.0
2586 Male, age 75, left hemisphere 273.7
1827 Male, age 72, unknown 210.3
2828 Female, age 72, unknown 205.1
1870 Female, age 42, unknown 174.7
2666 Male, age 74, left hemisphere 155.7
2411 Female, age 72, unknown 154.2
2219 Male, age 76, both hemispheres 146.8
1833 Male, age 53, unknown 145.2
2019 Male, age 18, unknown 128.5
1830 Male, age 51, unknown 115.4
Dorsal raphe nucleus
nTPM: 204.5
1828 Male, age 53, unknown 253.2
2016 Female, age 72, unknown 245.9
2298 Female, age 72, unknown 206.8
2047 Male, age 72, unknown 199.4
2750 Male, age 76, both hemispheres 117.2
Inferior colliculus
nTPM: 224.2
1848 Female, age 42, unknown 233.0
2849 Male, age 72, unknown 229.2
2097 Female, age 72, unknown 228.9
1890 Male, age 53, unknown 205.7
Median raphe nucleus
nTPM: 116.2
2220 Male, age 76, midline 116.2
Periaquaductal grey, anterior
nTPM: 198.0
1795 Male, age 51, unknown 223.0
2502 Female, age 75, unknown 213.1
1947 Male, age 18, unknown 157.9
Periaquaductal grey, dorsal
nTPM: 195.1
1840 Male, age 53, unknown 274.0
2464 Female, age 72, unknown 209.3
1831 Male, age 72, unknown 161.6
2850 Male, age 76, both hemispheres 135.7
Periaquaductal grey, lateral
nTPM: 176.8
2053 Male, age 18, unknown 234.7
2140 Male, age 76, both hemispheres 161.5
2272 Male, age 74, both hemispheres 134.1
Pretectal area
nTPM: 208.7
1944 Female, age 72, unknown 306.3
1816 Male, age 51, unknown 298.5
2667 Female, age 75, unknown 286.2
2224 Female, age 72, unknown 223.5
1817 Female, age 42, unknown 200.1
2007 Male, age 72, unknown 183.5
2825 Male, age 18, unknown 172.0
2316 Male, age 76, right hemisphere 171.3
2273 Male, age 74, both hemispheres 167.6
1815 Male, age 53, unknown 162.4
2407 Male, age 75, both hemispheres 124.9
Red nucleus
nTPM: 152.1
2503 Female, age 72, unknown 193.9
2227 Male, age 72, unknown 177.3
2769 Male, age 72, unknown 172.5
1954 Female, age 42, unknown 163.2
2725 Female, age 75, unknown 162.8
1821 Female, age 72, unknown 161.5
2588 Male, age 74, left hemisphere 156.9
2584 Male, age 75, left hemisphere 138.5
1904 Male, age 53, unknown 133.2
2785 Male, age 18, unknown 129.8
2823 Male, age 76, right hemisphere 123.2
1865 Male, age 51, unknown 112.6
Substantia nigra
nTPM: 225.0
1916 Female, age 42, unknown 280.1
2699 Male, age 18, unknown 262.7
2665 Male, age 74, both hemispheres 254.2
1851 Male, age 51, unknown 231.4
2241 Male, age 72, unknown 230.6
1889 Female, age 72, unknown 217.9
2409 Female, age 72, unknown 213.6
2583 Male, age 75, right hemisphere 209.2
1941 Male, age 53, unknown 177.7
2590 Female, age 75, unknown 172.3
Superior colliculus
nTPM: 189.5
2261 Male, age 18, unknown 246.6
2087 Female, age 72, unknown 245.1
1796 Male, age 53, unknown 238.9
2664 Male, age 75, both hemispheres 226.1
1839 Male, age 51, unknown 201.4
2587 Male, age 74, left hemisphere 178.9
1895 Male, age 76, right hemisphere 156.2
2668 Female, age 75, unknown 141.3
1913 Female, age 42, unknown 132.6
1995 Male, age 72, unknown 127.6
Ventral tegmental area
nTPM: 185.5
2410 Female, age 72, unknown 229.6
1915 Female, age 42, unknown 223.6
1942 Male, age 51, unknown 181.8
2021 Male, age 53, unknown 164.0
2218 Male, age 76, both hemispheres 158.1
2223 Female, age 72, unknown 156.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 106.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 106.8
Samples: 183

Max nTPM: 313.7
Min nTPM: 32.8
Std nTPM: 50.8
Median nTPM: 94.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 313.7
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 289.5
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 283.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 225.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 224.7
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 223.5
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 222.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 218.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 218.5
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 212.1
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 196.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 84.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 84.2
FF:10158-103A5 76 years, female 84.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 196.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 180.6
Samples: 4

Max nTPM: 211.1
Min nTPM: 126.4
Sample A Female 206.4
Sample B Female 126.4
Sample C Male 178.3
Sample D Male 211.1
Midbrain
nTPM: 196.6
Samples: 4

Max nTPM: 270.0
Min nTPM: 160.6
Sample A Female 270.0
Sample B Female 174.3
Sample C Male 181.5
Sample D Male 160.6
Periaqueductal gray
nTPM: 151.5
Samples: 3

Max nTPM: 162.4
Min nTPM: 138.7
Sample B Female 162.4
Sample C Male 153.5
Sample D Male 138.7
Superior colliculi
nTPM: 171.6
Samples: 4

Max nTPM: 208.9
Min nTPM: 111.5
Sample A Female 208.9
Sample B Female 111.5
Sample C Male 171.4
Sample D Male 194.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 53.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 53.1
Samples: 4

Max nTPM: 54.7
Min nTPM: 52.1
Sample A Male 54.7
Sample B Male 53.3
Sample C Female 52.4
Sample D Female 52.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.2
69201588 Antisense, RP_050317_03_B12, Mouse strain C57BL/6J (56 days, male) 5.0
72119592 Antisense, RP_051017_04_A07, Mouse strain C57BL/6J (56 days, male) 2.5
71764156 Antisense, RP_050921_03_C11, Mouse strain C57BL/6J (56 days, male) 2.0

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