HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni
Consensus:12.1 nTPM
HPA Brain:42.5 nTPM
GTEx:12.1 nTPM
FANTOM5:31.8 Scaled Tags Per Million
Pig:64.8 nTPM
Mouse:56.9 nTPM
Allen mouse:15.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA017438
Glial cells Not detected
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 42.5
Sample id Sample description nTPM
Hippocampus
nTPM: 27.5
1898 Male, age 80, left hemisphere 39.8
2148 Female, age 91, left hemisphere 27.3
2621 Female, age 67, right hemisphere 27.1
2529 Female, age 94, left hemisphere 25.2
1855 Male, age 76, left hemisphere 22.7
1911 Female, age 85, right hemisphere 22.6
Dentate gyrus
nTPM: 29.3
1927 Female, age 91, both hemispheres 41.3
2010 Male, age 76, both hemispheres 28.4
2246 Female, age 85, both hemispheres 28.3
2528 Male, age 74, both hemispheres 27.0
2531 Female, age 67, both hemispheres 26.8
2530 Female, age 94, left hemisphere 24.2
Entorhinal gyrus
nTPM: 32.8
2764 Male, age 80, right hemisphere 41.0
1938 Female, age 85, left hemisphere 38.5
2613 Female, age 94, left hemisphere 34.7
2686 Male, age 75, right hemisphere 30.5
1787 Male, age 76, left hemisphere 30.4
2117 Female, age 91, right hemisphere 21.8
Hippocampus, CA1
nTPM: 33.7
2749 Male, age 80, left hemisphere 51.5
1873 Female, age 85, both hemispheres 32.5
2527 Male, age 74, both hemispheres 30.0
2082 Female, age 91, right hemisphere 28.7
2045 Male, age 76, both hemispheres 25.8
Hippocampus, CA2
nTPM: 30.6
1892 Male, age 76, both hemispheres 41.9
1963 Male, age 80, left hemisphere 37.0
2249 Male, age 74, both hemispheres 27.7
2437 Female, age 94, left hemisphere 27.1
2113 Female, age 91, right hemisphere 25.0
1940 Female, age 85, left hemisphere 24.8
Hippocampus, CA3
nTPM: 33.0
2137 Male, age 80, left hemisphere 41.4
2620 Female, age 94, left hemisphere 41.3
1867 Male, age 76, both hemispheres 33.5
2436 Male, age 74, both hemispheres 29.4
1891 Female, age 85, both hemispheres 26.4
2861 Female, age 67, both hemispheres 26.2
Parahippocampal cortex
nTPM: 32.2
1850 Male, age 80, both hemispheres 45.4
1990 Female, age 91, right hemisphere 41.1
1933 Female, age 85, both hemispheres 36.1
2245 Female, age 91, both hemispheres 35.2
2250 Female, age 67, right hemisphere 32.7
2693 Female, age 94, both hemispheres 31.1
2532 Female, age 72, left hemisphere 29.6
2692 Male, age 74, both hemispheres 25.1
2622 Female, age 67, right hemisphere 23.8
2018 Male, age 76, both hemispheres 22.1
Perirhinal gyrus
nTPM: 42.5
1847 Female, age 91, left hemisphere 60.6
1794 Male, age 80, right hemisphere 43.5
1841 Female, age 85, right hemisphere 41.4
2521 Female, age 94, right hemisphere 33.5
2848 Male, age 76, right hemisphere 33.4
Subiculum
nTPM: 26.4
1977 Female, age 85, both hemispheres 38.0
1901 Male, age 80, both hemispheres 31.9
2619 Male, age 74, both hemispheres 24.8
2438 Female, age 94, left hemisphere 23.4
2729 Female, age 91, right hemisphere 21.6
2042 Male, age 76, both hemispheres 18.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 12.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 12.1
Samples: 255

Max nTPM: 31.4
Min nTPM: 1.5
Std nTPM: 5.8
Median nTPM: 11.4
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 31.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 30.6
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 29.4
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 25.3
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 25.2
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 24.3
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 24.3
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 24.2
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 24.1
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 23.9
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 23.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 31.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 31.8
FF:10169-103B7 60 years, female 42.5
FF:10153-102I9 76 years, female 21.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 64.8
Pig sample Sample description nTPM
Subiculum
nTPM: 64.8
Samples: 4

Max nTPM: 86.4
Min nTPM: 45.8
Sample A Female 86.4
Sample B Female 59.4
Sample C Male 67.5
Sample D Male 45.8
Dorsal hippocampus
nTPM: 49.1
Samples: 4

Max nTPM: 55.8
Min nTPM: 35.9
Sample A Female 55.8
Sample B Female 55.3
Sample C Male 49.2
Sample D Male 35.9
Entorhinal cortex
nTPM: 52.2
Samples: 4

Max nTPM: 55.7
Min nTPM: 46.7
Sample A Female 55.7
Sample B Female 54.6
Sample C Male 51.7
Sample D Male 46.7
Ventral hippocampus
nTPM: 60.7
Samples: 4

Max nTPM: 79.3
Min nTPM: 48.6
Sample A Female 62.9
Sample B Female 52.1
Sample C Male 79.3
Sample D Male 48.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 56.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 56.9
Samples: 4

Max nTPM: 60.0
Min nTPM: 52.6
Sample A Male 52.6
Sample B Male 55.5
Sample C Female 60.0
Sample D Female 59.4
Hippocampal formation
nTPM: 47.6
Samples: 4

Max nTPM: 53.8
Min nTPM: 37.3
Sample A Male 53.8
Sample B Male 49.8
Sample C Female 37.3
Sample D Female 49.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 15.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 15.9
70218896 Antisense, RP_050524_01_E07, Mouse strain C57BL/6J (56 days, male) 15.9

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