HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:14.3 nTPM
HPA Brain:58.6 nTPM
GTEx:14.3 nTPM
FANTOM5:75.0 Scaled Tags Per Million
Pig:8.0 nTPM
Mouse:0.1 nTPM
Allen mouse:11.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA042205Antibody HPA043013Antibody HPA048671Antibody CAB062336
Glial cells HighHighMediumHigh
Neuronal cells HighHighMediumMedium








HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 58.6
Sample id Sample description nTPM
Hippocampus
nTPM: 57.1
1911 Female, age 85, right hemisphere 68.0
2621 Female, age 67, right hemisphere 64.0
1855 Male, age 76, left hemisphere 61.4
1898 Male, age 80, left hemisphere 60.0
2148 Female, age 91, left hemisphere 51.7
2529 Female, age 94, left hemisphere 37.4
Dentate gyrus
nTPM: 53.5
2531 Female, age 67, both hemispheres 66.0
2246 Female, age 85, both hemispheres 61.4
1927 Female, age 91, both hemispheres 55.9
2010 Male, age 76, both hemispheres 52.0
2528 Male, age 74, both hemispheres 45.8
2530 Female, age 94, left hemisphere 39.7
Entorhinal gyrus
nTPM: 52.3
1938 Female, age 85, left hemisphere 65.8
2613 Female, age 94, left hemisphere 58.6
2764 Male, age 80, right hemisphere 56.2
2117 Female, age 91, right hemisphere 50.9
1787 Male, age 76, left hemisphere 46.1
2686 Male, age 75, right hemisphere 36.2
Hippocampus, CA1
nTPM: 57.1
2749 Male, age 80, left hemisphere 70.0
2045 Male, age 76, both hemispheres 67.5
1873 Female, age 85, both hemispheres 64.3
2082 Female, age 91, right hemisphere 46.4
2527 Male, age 74, both hemispheres 37.5
Hippocampus, CA2
nTPM: 54.6
1940 Female, age 85, left hemisphere 68.5
1892 Male, age 76, both hemispheres 63.3
1963 Male, age 80, left hemisphere 52.8
2249 Male, age 74, both hemispheres 50.4
2113 Female, age 91, right hemisphere 47.3
2437 Female, age 94, left hemisphere 45.0
Hippocampus, CA3
nTPM: 58.6
2436 Male, age 74, both hemispheres 82.4
2137 Male, age 80, left hemisphere 63.0
1891 Female, age 85, both hemispheres 61.9
1867 Male, age 76, both hemispheres 55.3
2620 Female, age 94, left hemisphere 51.3
2861 Female, age 67, both hemispheres 37.5
Parahippocampal cortex
nTPM: 41.6
2245 Female, age 91, both hemispheres 55.7
1933 Female, age 85, both hemispheres 52.5
2250 Female, age 67, right hemisphere 47.5
1850 Male, age 80, both hemispheres 47.3
1990 Female, age 91, right hemisphere 42.4
2532 Female, age 72, left hemisphere 41.6
2693 Female, age 94, both hemispheres 40.8
2018 Male, age 76, both hemispheres 40.3
2692 Male, age 74, both hemispheres 24.6
2622 Female, age 67, right hemisphere 23.5
Perirhinal gyrus
nTPM: 48.8
1847 Female, age 91, left hemisphere 57.0
1841 Female, age 85, right hemisphere 51.2
1794 Male, age 80, right hemisphere 48.6
2521 Female, age 94, right hemisphere 45.0
2848 Male, age 76, right hemisphere 42.3
Subiculum
nTPM: 52.5
1977 Female, age 85, both hemispheres 63.3
1901 Male, age 80, both hemispheres 61.2
2438 Female, age 94, left hemisphere 52.7
2042 Male, age 76, both hemispheres 50.8
2729 Female, age 91, right hemisphere 48.0
2619 Male, age 74, both hemispheres 39.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 14.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 14.3
Samples: 255

Max nTPM: 62.9
Min nTPM: 2.8
Std nTPM: 8.4
Median nTPM: 12.6
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 62.9
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 62.1
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 46.7
GTEX-15RJE-0011-R1b-SM-H6Q7N 40-49 years, male 44.7
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 43.7
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 42.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 38.3
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 37.1
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 35.1
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 33.0
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 31.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 75.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 75.0
FF:10169-103B7 60 years, female 89.3
FF:10153-102I9 76 years, female 60.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 8.0
Pig sample Sample description nTPM
Subiculum
nTPM: 7.9
Samples: 4

Max nTPM: 10.7
Min nTPM: 4.2
Sample A Female 10.7
Sample B Female 6.1
Sample C Male 4.2
Sample D Male 10.5
Dorsal hippocampus
nTPM: 8.0
Samples: 4

Max nTPM: 10.8
Min nTPM: 5.0
Sample A Female 10.8
Sample B Female 5.0
Sample C Male 7.6
Sample D Male 8.7
Entorhinal cortex
nTPM: 7.4
Samples: 4

Max nTPM: 10.3
Min nTPM: 4.9
Sample A Female 10.3
Sample B Female 7.5
Sample C Male 7.0
Sample D Male 4.9
Ventral hippocampus
nTPM: 6.2
Samples: 4

Max nTPM: 7.8
Min nTPM: 4.8
Sample A Female 7.8
Sample B Female 4.8
Sample C Male 5.8
Sample D Male 6.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 0.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 0.1
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.2
Hippocampal formation
nTPM: 0.1
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.0
Sample A Male 0.2
Sample B Male 0.2
Sample C Female 0.0
Sample D Female 0.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 11.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 11.3
69116889 Antisense, RP_050321_01_D03, Mouse strain C57BL/6J (56 days, male) 11.3

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