MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:77.0 nTPM
HPA Brain:117.3 nTPM
GTEx:77.0 nTPM
FANTOM5:436.6 Scaled Tags Per Million
Pig:169.1 nTPM
Mouse:29.5 nTPM
Allen mouse:1.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 117.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 67.3
2666 Male, age 74, left hemisphere 104.4
2828 Female, age 72, unknown 84.9
1830 Male, age 51, unknown 80.4
2019 Male, age 18, unknown 74.4
1833 Male, age 53, unknown 67.2
2411 Female, age 72, unknown 65.9
1870 Female, age 42, unknown 60.3
1827 Male, age 72, unknown 57.9
2219 Male, age 76, both hemispheres 41.4
2586 Male, age 75, left hemisphere 36.1
Dorsal raphe nucleus
nTPM: 93.9
2298 Female, age 72, unknown 124.6
2016 Female, age 72, unknown 108.9
2750 Male, age 76, both hemispheres 89.7
1828 Male, age 53, unknown 80.9
2047 Male, age 72, unknown 65.6
Inferior colliculus
nTPM: 68.2
2097 Female, age 72, unknown 84.0
1890 Male, age 53, unknown 67.6
1848 Female, age 42, unknown 62.1
2849 Male, age 72, unknown 59.2
Median raphe nucleus
nTPM: 73.9
2220 Male, age 76, midline 73.9
Periaquaductal grey, anterior
nTPM: 58.4
1795 Male, age 51, unknown 82.8
1947 Male, age 18, unknown 53.0
2502 Female, age 75, unknown 39.6
Periaquaductal grey, dorsal
nTPM: 92.1
1831 Male, age 72, unknown 120.6
2850 Male, age 76, both hemispheres 95.7
2464 Female, age 72, unknown 80.1
1840 Male, age 53, unknown 71.9
Periaquaductal grey, lateral
nTPM: 95.4
2272 Male, age 74, both hemispheres 121.0
2053 Male, age 18, unknown 84.0
2140 Male, age 76, both hemispheres 81.3
Pretectal area
nTPM: 77.9
2316 Male, age 76, right hemisphere 99.4
2407 Male, age 75, both hemispheres 98.6
2224 Female, age 72, unknown 95.1
2273 Male, age 74, both hemispheres 89.8
1817 Female, age 42, unknown 86.7
1944 Female, age 72, unknown 78.6
2007 Male, age 72, unknown 78.0
1815 Male, age 53, unknown 77.9
2825 Male, age 18, unknown 63.9
2667 Female, age 75, unknown 52.0
1816 Male, age 51, unknown 36.7
Red nucleus
nTPM: 73.7
2725 Female, age 75, unknown 101.7
2503 Female, age 72, unknown 96.2
1865 Male, age 51, unknown 94.4
2769 Male, age 72, unknown 84.4
2823 Male, age 76, right hemisphere 77.4
2227 Male, age 72, unknown 73.7
2785 Male, age 18, unknown 73.7
1904 Male, age 53, unknown 71.9
1821 Female, age 72, unknown 62.4
2584 Male, age 75, left hemisphere 60.0
1954 Female, age 42, unknown 52.6
2588 Male, age 74, left hemisphere 36.3
Substantia nigra
nTPM: 117.3
2590 Female, age 75, unknown 237.1
2699 Male, age 18, unknown 166.1
2665 Male, age 74, both hemispheres 142.2
1916 Female, age 42, unknown 117.5
1851 Male, age 51, unknown 105.0
2409 Female, age 72, unknown 92.3
1941 Male, age 53, unknown 91.6
2583 Male, age 75, right hemisphere 84.9
2241 Male, age 72, unknown 78.2
1889 Female, age 72, unknown 58.5
Superior colliculus
nTPM: 81.7
1913 Female, age 42, unknown 149.3
1995 Male, age 72, unknown 110.9
2587 Male, age 74, left hemisphere 105.1
1796 Male, age 53, unknown 81.2
2087 Female, age 72, unknown 75.5
1839 Male, age 51, unknown 74.9
2664 Male, age 75, both hemispheres 66.2
2261 Male, age 18, unknown 57.9
2668 Female, age 75, unknown 49.5
1895 Male, age 76, right hemisphere 46.1
Ventral tegmental area
nTPM: 105.6
2021 Male, age 53, unknown 151.1
2218 Male, age 76, both hemispheres 109.0
1915 Female, age 42, unknown 107.7
2410 Female, age 72, unknown 91.6
1942 Male, age 51, unknown 91.3
2223 Female, age 72, unknown 82.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 77.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 77.0
Samples: 183

Max nTPM: 874.8
Min nTPM: 2.6
Std nTPM: 92.5
Median nTPM: 51.3
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 874.8
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 498.8
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 384.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 308.6
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 305.0
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 289.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 284.7
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 257.3
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 213.2
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 203.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 198.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 436.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 436.6
FF:10158-103A5 76 years, female 436.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 169.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 128.9
Samples: 4

Max nTPM: 159.0
Min nTPM: 81.3
Sample A Female 128.1
Sample B Female 159.0
Sample C Male 147.1
Sample D Male 81.3
Midbrain
nTPM: 87.7
Samples: 4

Max nTPM: 157.3
Min nTPM: 48.3
Sample A Female 86.2
Sample B Female 157.3
Sample C Male 48.3
Sample D Male 58.9
Periaqueductal gray
nTPM: 169.1
Samples: 3

Max nTPM: 231.3
Min nTPM: 129.8
Sample B Female 146.3
Sample C Male 231.3
Sample D Male 129.8
Superior colliculi
nTPM: 78.3
Samples: 4

Max nTPM: 91.9
Min nTPM: 71.5
Sample A Female 91.9
Sample B Female 76.2
Sample C Male 71.5
Sample D Male 73.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 29.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 29.5
Samples: 4

Max nTPM: 35.4
Min nTPM: 25.5
Sample A Male 35.4
Sample B Male 25.5
Sample C Female 25.8
Sample D Female 31.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
70430916 Antisense, RP_050614_02_D02, Mouse strain C57BL/6J (56 days, male) 1.6
77340474 Antisense, RP_070116_02_C12, Mouse strain C57BL/6J (56 days, male) 1.2

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