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  • RCAN1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:122.4 nTPM
HPA Brain:63.2 nTPM
GTEx:122.4 nTPM
FANTOM5:66.6 Scaled Tags Per Million
Pig:32.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

63.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 51.2
1981 Female, age 72, midline 58.7
2048 Male, age 55, midline 52.7
2816 Male, age 47, midline 52.3
2565 Male, age 75, midline 48.0
2194 Female, age 79, both hemispheres 44.2
Cervical spinal cord, dorsal horn
nTPM: 62.6
2296 Male, age 66, both hemispheres 87.6
2173 Female, age 72, unknown 69.3
2069 Male, age 47, both hemispheres 67.2
1877 Male, age 55, unknown 63.1
2297 Male, age 75, both hemispheres 49.1
2721 Male, age 90, both hemispheres 39.5
Cervical spinal cord, ventral horn
nTPM: 63.2
2480 Male, age 75, both hemispheres 83.3
2809 Male, age 90, both hemispheres 68.2
2295 Male, age 66, both hemispheres 63.2
2098 Female, age 72, unknown 62.0
2068 Male, age 55, unknown 55.0
2820 Female, age 79, both hemispheres 47.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

122.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 122.4
Samples: 204

Max nTPM: 243.1
Min nTPM: 49.7
Std nTPM: 34.9
Median nTPM: 118.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 243.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 208.9
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 206.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 205.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 204.5
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 202.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 194.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 192.2
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 189.5
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 185.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 183.3
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 182.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 180.4
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 180.3
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 179.7
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 178.1
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 177.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 176.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 174.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 173.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 172.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 171.7
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 171.2
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 167.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 167.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 165.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 163.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 162.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 162.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 161.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 161.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 160.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 158.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 155.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 155.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 154.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 152.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 151.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 150.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 149.3
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 149.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 148.1
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 147.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 147.6
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 146.5
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 146.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 145.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 145.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 144.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 144.5
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 144.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 143.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 142.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 142.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 142.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 142.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 142.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 141.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 141.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 140.3
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 139.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 139.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 138.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 136.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 135.2
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 135.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 134.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 133.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 133.4
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 132.8
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 132.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 131.7
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 131.3
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 130.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 130.0
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 129.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 129.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 128.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 127.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 127.4
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 127.2
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 127.0
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 126.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 126.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 125.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 124.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 124.4
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 123.3
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 123.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 123.0
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 122.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 122.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 122.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 121.9
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 120.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 120.2
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 120.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 120.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 119.8
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 119.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 119.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 119.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 118.1
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 117.9
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 117.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 117.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 116.8
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 116.5
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 115.4
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 115.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 115.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 115.0
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 114.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 114.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 113.6
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 113.1
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 112.2
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 112.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 111.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 111.4
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 111.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 110.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 110.4
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 110.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 109.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 109.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 109.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 109.4
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 108.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 108.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 108.4
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 107.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 107.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 107.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 107.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 107.3
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 106.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 106.0
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 105.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 105.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 104.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 104.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 103.5
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 102.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 102.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 102.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 102.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 101.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 100.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 100.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 100.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 99.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 98.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 98.3
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 97.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 97.3
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 96.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 96.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 96.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 95.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 95.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 94.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 93.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 93.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 93.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 92.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 91.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 90.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 90.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 87.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 87.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 87.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 87.0
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 86.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 85.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 85.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 85.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 84.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 84.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 83.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 83.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 82.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 82.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 80.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 78.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 77.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 77.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 76.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 74.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 74.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 73.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 73.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 71.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 69.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 66.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 66.1
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 63.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 63.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 60.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 58.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 56.6
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 56.4
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 53.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 49.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

66.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 66.6
FF:10159-103A6 76 years, female 67.8
FF:10181-103D1 60 years, female 65.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

32.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 32.4
Samples: 4

Max nTPM: 41.5
Min nTPM: 27.3
Sample A Female 27.3
Sample B Female 31.3
Sample C Male 41.5
Sample D Male 29.6
Ventral spinal cord
nTPM: 31.2
Samples: 4

Max nTPM: 34.2
Min nTPM: 28.2
Sample A Female 29.0
Sample B Female 28.2
Sample C Male 34.2
Sample D Male 33.2

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