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  • SUMMARY

  • TISSUE

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  • PSMD4
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:139.8 nTPM
FANTOM5:85.0 Scaled Tags Per Million
Pig:66.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA038807Antibody HPA039252Antibody CAB047300
Glial cells LowNot detectedLow
Neuronal cells HighHighMedium







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

139.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 139.8
Samples: 300

Max nTPM: 244.7
Min nTPM: 73.6
Std nTPM: 31.4
Median nTPM: 134.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 244.7
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 235.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 235.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 225.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 216.5
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 215.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 210.3
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 209.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 208.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 208.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 207.5
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 206.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 203.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 198.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 196.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 195.9
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 195.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 193.4
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 191.8
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 191.1
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 190.7
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 189.5
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 188.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 187.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 187.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 186.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 184.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 183.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 182.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 180.0
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 179.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 178.4
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 178.3
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 178.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 177.8
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 177.7
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 175.6
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 175.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 175.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 175.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 174.3
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 174.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 174.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 173.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 173.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 172.2
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 171.8
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 170.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 170.8
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 170.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 170.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 170.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 169.9
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 168.6
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 168.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 167.9
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 167.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 167.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 166.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 166.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 164.7
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 164.6
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 164.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 163.8
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 163.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 163.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 163.0
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 162.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 162.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 162.7
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 162.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 162.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 162.2
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 162.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 162.1
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 162.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 161.8
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 160.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 160.8
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 160.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 160.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 160.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 159.7
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 158.6
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 158.2
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 158.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 157.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 157.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 157.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 157.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 156.2
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 155.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 155.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 155.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 153.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 152.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 152.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 152.5
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 152.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 152.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 150.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 150.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 148.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 147.9
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 147.7
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 147.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 146.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 146.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 146.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 146.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 146.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 145.8
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 145.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 144.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 144.5
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 144.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 144.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 143.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 143.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 143.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 142.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 142.5
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 142.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 142.3
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 142.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 142.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 142.0
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 141.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 141.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 141.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 140.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 140.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 140.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 139.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 139.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 139.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 138.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 138.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 138.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 138.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 137.9
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 137.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 137.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 137.3
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 137.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 136.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 135.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 135.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 135.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 134.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 134.9
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 134.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 134.6
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 134.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 134.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 133.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 133.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 133.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 133.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 133.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 132.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 131.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 131.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 131.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 131.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 131.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 130.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 130.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 129.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 129.2
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 129.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 128.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 128.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 128.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 128.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 128.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 128.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 128.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 128.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 128.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 128.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 127.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 127.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 127.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 127.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 126.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 126.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 126.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 126.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 126.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 126.3
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 126.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 126.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 125.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 125.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 125.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 125.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 124.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 124.0
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 123.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 123.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 123.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 122.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 122.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 121.6
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 121.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 121.4
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 121.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 120.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 120.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 120.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 120.6
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 120.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 120.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 119.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 119.1
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 119.0
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 118.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 118.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 118.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 118.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 117.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 117.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 117.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 116.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 116.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 116.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 115.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 115.5
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 115.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 115.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 115.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 114.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 113.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 113.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 113.6
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 113.6
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 113.5
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 113.4
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 112.9
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 112.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 112.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 111.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 111.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 111.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 111.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 110.6
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 110.6
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 110.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 109.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 109.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 108.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 108.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 108.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 108.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 107.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 107.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 107.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 107.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 107.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 107.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 106.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 106.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 106.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 105.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 105.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 104.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 104.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 104.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 104.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 103.9
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 103.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 103.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 102.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 102.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 101.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 101.5
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 101.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 100.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 99.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 99.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 99.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 98.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 97.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 94.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 92.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 90.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 90.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 90.2
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 89.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 89.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 88.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 86.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 86.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 83.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 83.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 82.6
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 78.1
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 76.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 73.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

85.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 85.0
FF:10164-103B2 76 years, female 85.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

66.2
Pig sample Sample description nTPM
Caudate
nTPM: 66.2
Samples: 4

Max nTPM: 78.3
Min nTPM: 59.0
Sample A Female 60.3
Sample B Female 67.3
Sample C Male 78.3
Sample D Male 59.0

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