MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:56.3 nTPM
HPA Brain:191.3 nTPM
GTEx:56.3 nTPM
FANTOM5:39.1 Scaled Tags Per Million
Pig:81.9 nTPM
Mouse:30.0 nTPM
Allen mouse:9.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 191.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 162.5
2666 Male, age 74, left hemisphere 225.4
2586 Male, age 75, left hemisphere 206.9
2219 Male, age 76, both hemispheres 182.9
1827 Male, age 72, unknown 179.4
2411 Female, age 72, unknown 163.1
2828 Female, age 72, unknown 161.8
2019 Male, age 18, unknown 156.0
1833 Male, age 53, unknown 120.3
1870 Female, age 42, unknown 117.9
1830 Male, age 51, unknown 111.4
Dorsal raphe nucleus
nTPM: 154.9
2298 Female, age 72, unknown 186.5
2047 Male, age 72, unknown 174.2
1828 Male, age 53, unknown 152.9
2750 Male, age 76, both hemispheres 151.3
2016 Female, age 72, unknown 109.5
Inferior colliculus
nTPM: 129.4
2097 Female, age 72, unknown 144.8
1848 Female, age 42, unknown 133.6
1890 Male, age 53, unknown 122.7
2849 Male, age 72, unknown 116.6
Median raphe nucleus
nTPM: 166.1
2220 Male, age 76, midline 166.1
Periaquaductal grey, anterior
nTPM: 181.8
1795 Male, age 51, unknown 187.0
1947 Male, age 18, unknown 185.6
2502 Female, age 75, unknown 172.7
Periaquaductal grey, dorsal
nTPM: 120.1
1840 Male, age 53, unknown 132.5
2464 Female, age 72, unknown 128.8
1831 Male, age 72, unknown 122.7
2850 Male, age 76, both hemispheres 96.5
Periaquaductal grey, lateral
nTPM: 106.5
2053 Male, age 18, unknown 114.3
2140 Male, age 76, both hemispheres 109.2
2272 Male, age 74, both hemispheres 96.1
Pretectal area
nTPM: 164.9
1816 Male, age 51, unknown 243.3
2007 Male, age 72, unknown 239.0
1944 Female, age 72, unknown 216.9
1817 Female, age 42, unknown 202.5
1815 Male, age 53, unknown 172.6
2667 Female, age 75, unknown 152.6
2224 Female, age 72, unknown 152.2
2825 Male, age 18, unknown 128.4
2407 Male, age 75, both hemispheres 113.6
2316 Male, age 76, right hemisphere 99.3
2273 Male, age 74, both hemispheres 94.0
Red nucleus
nTPM: 123.5
2584 Male, age 75, left hemisphere 166.9
2785 Male, age 18, unknown 149.5
2725 Female, age 75, unknown 132.7
2588 Male, age 74, left hemisphere 132.2
1954 Female, age 42, unknown 121.0
1821 Female, age 72, unknown 120.8
2227 Male, age 72, unknown 117.5
2503 Female, age 72, unknown 117.3
2769 Male, age 72, unknown 114.8
1904 Male, age 53, unknown 107.0
1865 Male, age 51, unknown 102.2
2823 Male, age 76, right hemisphere 100.7
Substantia nigra
nTPM: 191.3
1916 Female, age 42, unknown 273.5
1941 Male, age 53, unknown 268.2
2665 Male, age 74, both hemispheres 237.0
1851 Male, age 51, unknown 210.2
1889 Female, age 72, unknown 194.8
2241 Male, age 72, unknown 163.0
2583 Male, age 75, right hemisphere 156.7
2409 Female, age 72, unknown 148.8
2699 Male, age 18, unknown 141.1
2590 Female, age 75, unknown 119.5
Superior colliculus
nTPM: 150.7
2668 Female, age 75, unknown 224.5
2087 Female, age 72, unknown 185.8
2261 Male, age 18, unknown 176.3
1796 Male, age 53, unknown 165.3
2664 Male, age 75, both hemispheres 160.5
1895 Male, age 76, right hemisphere 141.8
1839 Male, age 51, unknown 134.7
2587 Male, age 74, left hemisphere 114.5
1913 Female, age 42, unknown 104.2
1995 Male, age 72, unknown 99.7
Ventral tegmental area
nTPM: 165.8
2410 Female, age 72, unknown 212.6
2218 Male, age 76, both hemispheres 202.0
1915 Female, age 42, unknown 181.1
1942 Male, age 51, unknown 163.1
2021 Male, age 53, unknown 126.3
2223 Female, age 72, unknown 109.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 56.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 56.3
Samples: 183

Max nTPM: 218.4
Min nTPM: 12.5
Std nTPM: 39.1
Median nTPM: 44.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 218.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 190.2
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 171.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 161.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 160.2
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 150.9
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 147.7
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 143.0
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 139.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 139.1
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 136.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 39.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 39.1
FF:10158-103A5 76 years, female 39.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 81.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 80.2
Samples: 4

Max nTPM: 111.5
Min nTPM: 39.4
Sample A Female 111.5
Sample B Female 58.6
Sample C Male 111.4
Sample D Male 39.4
Midbrain
nTPM: 76.0
Samples: 4

Max nTPM: 114.9
Min nTPM: 46.0
Sample A Female 46.0
Sample B Female 61.0
Sample C Male 114.9
Sample D Male 82.2
Periaqueductal gray
nTPM: 63.3
Samples: 3

Max nTPM: 79.2
Min nTPM: 53.1
Sample B Female 57.6
Sample C Male 79.2
Sample D Male 53.1
Superior colliculi
nTPM: 82.0
Samples: 4

Max nTPM: 104.2
Min nTPM: 47.3
Sample A Female 90.9
Sample B Female 47.3
Sample C Male 104.2
Sample D Male 85.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 30.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.0
Samples: 4

Max nTPM: 34.4
Min nTPM: 27.0
Sample A Male 34.4
Sample B Male 27.0
Sample C Female 27.7
Sample D Female 30.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 9.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.7
68160844 Antisense, RP_041122_01_B05, Mouse strain C57BL/6J (56 days, male) 9.7

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