MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.7 nTPM
HPA Brain:52.4 nTPM
GTEx:15.7 nTPM
FANTOM5:1.3 Scaled Tags Per Million
Pig:28.3 nTPM
Mouse:21.3 nTPM
Allen mouse:2.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 52.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.8
2219 Male, age 76, both hemispheres 44.7
2666 Male, age 74, left hemisphere 32.9
2828 Female, age 72, unknown 29.1
2586 Male, age 75, left hemisphere 24.3
1827 Male, age 72, unknown 24.0
1870 Female, age 42, unknown 19.1
2019 Male, age 18, unknown 18.5
2411 Female, age 72, unknown 16.6
1833 Male, age 53, unknown 14.9
1830 Male, age 51, unknown 14.1
Dorsal raphe nucleus
nTPM: 23.3
2750 Male, age 76, both hemispheres 28.8
2047 Male, age 72, unknown 28.6
2298 Female, age 72, unknown 26.6
1828 Male, age 53, unknown 19.4
2016 Female, age 72, unknown 12.9
Inferior colliculus
nTPM: 21.0
2097 Female, age 72, unknown 26.1
2849 Male, age 72, unknown 21.9
1890 Male, age 53, unknown 19.3
1848 Female, age 42, unknown 16.6
Median raphe nucleus
nTPM: 52.4
2220 Male, age 76, midline 52.4
Periaquaductal grey, anterior
nTPM: 31.6
2502 Female, age 75, unknown 38.7
1795 Male, age 51, unknown 36.6
1947 Male, age 18, unknown 19.6
Periaquaductal grey, dorsal
nTPM: 26.1
1831 Male, age 72, unknown 31.8
1840 Male, age 53, unknown 27.3
2850 Male, age 76, both hemispheres 26.7
2464 Female, age 72, unknown 18.6
Periaquaductal grey, lateral
nTPM: 18.6
2140 Male, age 76, both hemispheres 21.3
2053 Male, age 18, unknown 21.2
2272 Male, age 74, both hemispheres 13.4
Pretectal area
nTPM: 31.8
1816 Male, age 51, unknown 53.7
2667 Female, age 75, unknown 41.9
1944 Female, age 72, unknown 40.8
1815 Male, age 53, unknown 40.6
1817 Female, age 42, unknown 38.0
2007 Male, age 72, unknown 36.5
2224 Female, age 72, unknown 32.5
2825 Male, age 18, unknown 23.9
2407 Male, age 75, both hemispheres 17.0
2316 Male, age 76, right hemisphere 14.8
2273 Male, age 74, both hemispheres 10.3
Red nucleus
nTPM: 12.6
2584 Male, age 75, left hemisphere 24.8
2785 Male, age 18, unknown 22.1
1954 Female, age 42, unknown 12.6
1904 Male, age 53, unknown 12.4
2588 Male, age 74, left hemisphere 12.3
2823 Male, age 76, right hemisphere 11.5
2503 Female, age 72, unknown 10.1
2769 Male, age 72, unknown 9.7
1865 Male, age 51, unknown 9.1
2227 Male, age 72, unknown 9.1
2725 Female, age 75, unknown 9.1
1821 Female, age 72, unknown 8.3
Substantia nigra
nTPM: 25.4
2665 Male, age 74, both hemispheres 49.1
1916 Female, age 42, unknown 37.5
1851 Male, age 51, unknown 28.9
1889 Female, age 72, unknown 28.5
2409 Female, age 72, unknown 21.8
2699 Male, age 18, unknown 20.7
2241 Male, age 72, unknown 19.6
1941 Male, age 53, unknown 19.2
2583 Male, age 75, right hemisphere 17.7
2590 Female, age 75, unknown 10.9
Superior colliculus
nTPM: 26.3
2668 Female, age 75, unknown 36.4
2087 Female, age 72, unknown 36.2
1796 Male, age 53, unknown 34.1
2261 Male, age 18, unknown 30.2
2664 Male, age 75, both hemispheres 28.8
1913 Female, age 42, unknown 23.2
1995 Male, age 72, unknown 20.5
1839 Male, age 51, unknown 19.6
1895 Male, age 76, right hemisphere 17.7
2587 Male, age 74, left hemisphere 16.2
Ventral tegmental area
nTPM: 32.3
2218 Male, age 76, both hemispheres 44.4
2021 Male, age 53, unknown 33.5
2223 Female, age 72, unknown 32.5
1942 Male, age 51, unknown 29.6
1915 Female, age 42, unknown 29.1
2410 Female, age 72, unknown 24.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 15.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.7
Samples: 183

Max nTPM: 101.6
Min nTPM: 0.6
Std nTPM: 14.8
Median nTPM: 12.4
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 101.6
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 95.0
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 84.4
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 77.2
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 45.3
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 39.9
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 36.7
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 36.3
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 36.3
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 34.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 34.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1.3
FF:10158-103A5 76 years, female 1.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 28.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 14.6
Samples: 4

Max nTPM: 25.9
Min nTPM: 4.4
Sample A Female 17.1
Sample B Female 10.9
Sample C Male 25.9
Sample D Male 4.4
Midbrain
nTPM: 28.3
Samples: 4

Max nTPM: 47.9
Min nTPM: 5.8
Sample A Female 5.8
Sample B Female 12.8
Sample C Male 46.6
Sample D Male 47.9
Periaqueductal gray
nTPM: 13.2
Samples: 3

Max nTPM: 18.1
Min nTPM: 10.4
Sample B Female 10.4
Sample C Male 18.1
Sample D Male 11.2
Superior colliculi
nTPM: 24.0
Samples: 4

Max nTPM: 27.4
Min nTPM: 22.1
Sample A Female 24.0
Sample B Female 22.1
Sample C Male 22.5
Sample D Male 27.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 21.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.4
Samples: 4

Max nTPM: 24.8
Min nTPM: 17.4
Sample A Male 24.7
Sample B Male 17.4
Sample C Female 18.5
Sample D Female 24.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.8
69837860 Antisense, RP_050222_02_D10, Mouse strain C57BL/6J (56 days, male) 3.0
74641324 Antisense, RP_060220_02_F01, Mouse strain C57BL/6J (56 days, male) 2.6

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