MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:48.8 nTPM
HPA Brain:38.8 nTPM
GTEx:48.8 nTPM
FANTOM5:86.3 Scaled Tags Per Million
Pig:87.8 nTPM
Mouse:26.4 nTPM
Allen mouse:2.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 38.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.6
2666 Male, age 74, left hemisphere 51.5
2586 Male, age 75, left hemisphere 48.4
2019 Male, age 18, unknown 40.9
2828 Female, age 72, unknown 37.7
1833 Male, age 53, unknown 30.4
1827 Male, age 72, unknown 29.7
1830 Male, age 51, unknown 28.7
2219 Male, age 76, both hemispheres 28.2
1870 Female, age 42, unknown 25.6
2411 Female, age 72, unknown 24.9
Dorsal raphe nucleus
nTPM: 29.6
1828 Male, age 53, unknown 34.9
2047 Male, age 72, unknown 32.4
2750 Male, age 76, both hemispheres 29.4
2016 Female, age 72, unknown 26.2
2298 Female, age 72, unknown 25.0
Inferior colliculus
nTPM: 28.3
2849 Male, age 72, unknown 31.7
1890 Male, age 53, unknown 28.9
1848 Female, age 42, unknown 28.3
2097 Female, age 72, unknown 24.2
Median raphe nucleus
nTPM: 34.1
2220 Male, age 76, midline 34.1
Periaquaductal grey, anterior
nTPM: 27.5
1795 Male, age 51, unknown 30.6
1947 Male, age 18, unknown 28.4
2502 Female, age 75, unknown 23.6
Periaquaductal grey, dorsal
nTPM: 28.5
2850 Male, age 76, both hemispheres 37.0
1831 Male, age 72, unknown 30.4
2464 Female, age 72, unknown 25.0
1840 Male, age 53, unknown 21.7
Periaquaductal grey, lateral
nTPM: 29.9
2140 Male, age 76, both hemispheres 33.9
2272 Male, age 74, both hemispheres 31.4
2053 Male, age 18, unknown 24.5
Pretectal area
nTPM: 31.8
2007 Male, age 72, unknown 42.8
1817 Female, age 42, unknown 39.3
2407 Male, age 75, both hemispheres 39.3
1944 Female, age 72, unknown 34.0
1815 Male, age 53, unknown 33.5
1816 Male, age 51, unknown 32.4
2316 Male, age 76, right hemisphere 29.9
2825 Male, age 18, unknown 27.0
2224 Female, age 72, unknown 25.4
2273 Male, age 74, both hemispheres 23.8
2667 Female, age 75, unknown 22.8
Red nucleus
nTPM: 31.0
2785 Male, age 18, unknown 40.0
2584 Male, age 75, left hemisphere 39.3
2725 Female, age 75, unknown 33.4
2823 Male, age 76, right hemisphere 33.1
2769 Male, age 72, unknown 31.2
1865 Male, age 51, unknown 31.1
1904 Male, age 53, unknown 29.6
2227 Male, age 72, unknown 29.6
1954 Female, age 42, unknown 28.0
1821 Female, age 72, unknown 26.3
2588 Male, age 74, left hemisphere 25.3
2503 Female, age 72, unknown 25.0
Substantia nigra
nTPM: 38.8
1916 Female, age 42, unknown 47.6
2583 Male, age 75, right hemisphere 46.7
1941 Male, age 53, unknown 44.5
2590 Female, age 75, unknown 43.8
2699 Male, age 18, unknown 40.4
1851 Male, age 51, unknown 40.1
1889 Female, age 72, unknown 35.6
2665 Male, age 74, both hemispheres 35.1
2241 Male, age 72, unknown 29.4
2409 Female, age 72, unknown 24.7
Superior colliculus
nTPM: 29.9
2664 Male, age 75, both hemispheres 38.5
2668 Female, age 75, unknown 37.0
2587 Male, age 74, left hemisphere 35.6
1796 Male, age 53, unknown 32.2
2087 Female, age 72, unknown 30.7
1839 Male, age 51, unknown 27.8
1895 Male, age 76, right hemisphere 25.2
1913 Female, age 42, unknown 24.6
1995 Male, age 72, unknown 23.7
2261 Male, age 18, unknown 23.4
Ventral tegmental area
nTPM: 31.4
1915 Female, age 42, unknown 35.8
2218 Male, age 76, both hemispheres 33.9
2410 Female, age 72, unknown 31.3
1942 Male, age 51, unknown 31.1
2223 Female, age 72, unknown 29.0
2021 Male, age 53, unknown 27.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 48.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 48.8
Samples: 183

Max nTPM: 163.7
Min nTPM: 21.3
Std nTPM: 19.1
Median nTPM: 43.8
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 163.7
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 126.8
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 106.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 105.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 103.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 91.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 87.9
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 87.5
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 86.5
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 85.7
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 85.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 86.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 86.3
FF:10158-103A5 76 years, female 86.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 87.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 83.9
Samples: 4

Max nTPM: 102.0
Min nTPM: 72.2
Sample A Female 85.4
Sample B Female 75.8
Sample C Male 72.2
Sample D Male 102.0
Midbrain
nTPM: 87.8
Samples: 4

Max nTPM: 172.3
Min nTPM: 44.6
Sample A Female 172.3
Sample B Female 84.1
Sample C Male 44.6
Sample D Male 50.3
Periaqueductal gray
nTPM: 74.7
Samples: 3

Max nTPM: 81.7
Min nTPM: 68.7
Sample B Female 73.6
Sample C Male 81.7
Sample D Male 68.7
Superior colliculi
nTPM: 74.9
Samples: 4

Max nTPM: 91.8
Min nTPM: 58.8
Sample A Female 91.8
Sample B Female 58.8
Sample C Male 71.1
Sample D Male 77.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 26.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.4
Samples: 4

Max nTPM: 27.0
Min nTPM: 25.7
Sample A Male 25.7
Sample B Male 26.0
Sample C Female 26.8
Sample D Female 27.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
70200812 Antisense, RP_050517_02_E12, Mouse strain C57BL/6J (56 days, male) 2.4
71670710 Antisense, RP_050517_02_E12, Mouse strain C57BL/6J (56 days, male) 0.9

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