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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:69.7 nTPM
HPA Brain:139.2 nTPM
GTEx:69.7 nTPM
FANTOM5:269.8 Scaled Tags Per Million
Pig:158.2 nTPM
Mouse:215.4 nTPM
Allen mouse:20.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

139.2
Sample id Sample description nTPM
Amygdala
nTPM: 103.5
2695 Female, age 67, right hemisphere 147.7
2517 Female, age 94, left hemisphere 103.5
2814 Male, age 76, right hemisphere 100.2
1987 Female, age 91, left hemisphere 91.3
2514 Male, age 75, right hemisphere 74.6
Basal amygdala
nTPM: 139.2
2685 Female, age 94, left hemisphere 171.5
2827 Female, age 67, right hemisphere 170.2
2609 Male, age 75, right hemisphere 151.4
2243 Female, age 91, right hemisphere 135.0
1955 Male, age 76, both hemispheres 109.7
2110 Male, age 80, left hemisphere 97.6
Central amygdala
nTPM: 122.4
2826 Female, age 94, left hemisphere 160.5
2515 Male, age 75, right hemisphere 129.0
2239 Male, age 80, left hemisphere 115.5
2701 Female, age 91, right hemisphere 113.4
1905 Male, age 76, both hemispheres 93.8
Corticomedial amygdala
nTPM: 121.3
2535 Female, age 67, right hemisphere 174.6
2829 Male, age 80, left hemisphere 145.2
2242 Female, age 91, right hemisphere 111.1
2428 Male, age 75, right hemisphere 107.8
2429 Female, age 94, left hemisphere 101.7
2240 Male, age 76, both hemispheres 87.5
Lateral amygdala
nTPM: 122.1
2256 Male, age 80, left hemisphere 136.4
2255 Female, age 91, right hemisphere 133.0
2534 Female, age 94, left hemisphere 131.6
2830 Female, age 67, right hemisphere 127.7
2516 Male, age 75, right hemisphere 111.7
1883 Male, age 76, both hemispheres 92.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

69.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 69.7
Samples: 181

Max nTPM: 154.3
Min nTPM: 10.1
Std nTPM: 29.4
Median nTPM: 67.3
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 154.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 147.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 145.0
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 130.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 122.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 118.9
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 117.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 116.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 116.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 116.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 115.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 114.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 113.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 113.1
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 112.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 111.8
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 111.6
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 110.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 110.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 109.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 107.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 106.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 103.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 103.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 102.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 102.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 102.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 102.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 102.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 101.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 100.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 100.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 98.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 98.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 97.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 97.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 97.2
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 96.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 96.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 96.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 94.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 93.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 93.4
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 93.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 93.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 91.7
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 91.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 90.8
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 90.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 89.7
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 87.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 87.3
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 87.2
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 86.5
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 86.3
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 85.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 85.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 85.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 85.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 84.8
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 84.5
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 83.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 83.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 82.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 82.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 81.4
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 80.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 80.6
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 80.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 80.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 80.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 80.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 79.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 79.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 79.1
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 75.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 75.3
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 75.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 75.1
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 74.9
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 74.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 74.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 73.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 71.6
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 71.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 70.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 69.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 69.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 69.5
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 68.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 67.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 67.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 67.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 66.3
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 66.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 66.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 65.0
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 64.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 63.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 63.7
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 63.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 62.8
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 62.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 62.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 62.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 61.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 61.1
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 61.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 60.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 59.7
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 59.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 59.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 58.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 57.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 57.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 56.1
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 56.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 55.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 55.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 55.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 55.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 52.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 50.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 49.9
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 49.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 48.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 47.3
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 47.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 46.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 46.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 45.9
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 45.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 44.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 44.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 44.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 43.9
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 43.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 42.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 42.6
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 42.6
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 42.0
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 41.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 40.8
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 40.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 40.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 39.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 39.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 39.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 37.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 37.3
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 37.3
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 36.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 36.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 36.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 35.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 35.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 35.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 35.0
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 34.6
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 34.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 34.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 33.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 33.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 33.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 31.9
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 31.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 30.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 30.8
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 29.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 28.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 28.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 27.6
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 26.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 25.8
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 25.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 23.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 23.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 21.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 20.2
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 17.3
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 10.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

269.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 269.8
FF:10151-102I7 76 years, female 269.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

158.2
Pig sample Sample description nTPM
Amygdala
nTPM: 158.2
Samples: 4

Max nTPM: 202.6
Min nTPM: 121.0
Sample A Female 202.6
Sample B Female 121.0
Sample C Male 146.8
Sample D Male 162.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

215.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 215.4
Samples: 4

Max nTPM: 224.9
Min nTPM: 203.6
Sample A Male 218.5
Sample B Male 203.6
Sample C Female 214.6
Sample D Female 224.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

20.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 20.3
70305383 Antisense, RP_050609_04_A07, Mouse strain C57BL/6J (56 days, male) 20.3

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