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TISSUE PRIMARY DATA URINARY BLADDER Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Urinary bladder
Tissue proteome
Tissue methods
URINARY BLADDER - Expression summary
Protein expression
Urinary bladderi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Urothelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:188.7 nTPM
HPA:143.2 nTPM
GTEx:188.7 nTPM
FANTOM5:311.6 Scaled Tags Per Million
URINARY BLADDER - SINGLE CELL RNA EXPRESSION
Explore single cell type data

URINARY BLADDER - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA044999
Urothelial cells Medium


URINARY BLADDER - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

143.2
overview
Male, age 74
Urinary bladder sample 264
nTPM: 178.1
Cell types%
Urothelial cells:
5

Smooth muscle cells:
60

Fibroblasts:
20

Endothelial cells:
10

Other cell types:
5

overview
Male, age 80
Urinary bladder sample 265
nTPM: 113
Cell types%
Urothelial cells:
10

Smooth muscle cells:
45

Fibroblasts:
15

Endothelial cells:
10

Other cell types:
20

N/A
Female, age 0.1
Urinary bladder sample 1597
nTPM: 133.3
N/A
Female, age 0.1
Urinary bladder sample 1598
nTPM: 148.5

URINARY BLADDER - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

188.7
GTEx sample id Sample description nTPM
Bladder
Average nTPM: 188.7
Samples: 77

Max nTPM: 370.0
Min nTPM: 99.4
Std nTPM: 60.2
Median nTPM: 178.0
GTEX-T5JC-1126-SM-GPIA1 20-29 years, male 370.0
GTEX-Q734-1226-SM-GRR21 40-49 years, female 369.8
GTEX-PLZ6-1026-SM-GQ1C8 30-39 years, male 345.0
GTEX-P4QS-1926-SM-GQ1BY 60-69 years, male 319.1
GTEX-P4PQ-1926-SM-GRR14 60-69 years, male 293.0
GTEX-OOBJ-1926-SM-GRR1P 60-69 years, male 290.7
GTEX-QV31-0926-SM-GQ1C6 30-39 years, male 276.1
GTEX-SE5C-1026-SM-4BRUG 40-49 years, female 258.6
GTEX-T2IS-2526-SM-GRR23 20-29 years, female 254.2
GTEX-OHPK-1926-SM-H7OF2 50-59 years, female 253.2
GTEX-QEL4-1826-SM-EZ6KU 50-59 years, male 248.4
GTEX-QDT8-2826-SM-GOQYY 30-39 years, female 247.3
GTEX-QDVJ-1526-SM-GPI84 50-59 years, male 244.7
GTEX-PLZ5-1326-SM-GQ1C2 50-59 years, male 243.2
GTEX-RWS6-1426-SM-GPRWQ 60-69 years, female 233.7
GTEX-QV44-1426-SM-GPI8D 50-59 years, male 231.0
GTEX-OIZI-1926-SM-H7OGY 40-49 years, male 228.1
GTEX-S4P3-0826-SM-H7OF3 50-59 years, female 224.9
GTEX-REY6-2026-SM-GPRYL 60-69 years, male 222.4
GTEX-OIZF-1926-SM-7PBZS 60-69 years, male 220.8
GTEX-S33H-1926-SM-EYYVH 30-39 years, male 216.2
GTEX-P78B-2126-SM-GQ1C3 40-49 years, female 214.0
GTEX-U4B1-1226-SM-4DXT7 40-49 years, male 212.5
GTEX-TKQ2-0526-SM-GRR15 50-59 years, male 212.0
GTEX-TMMY-1526-SM-4DXST 40-49 years, female 211.8
GTEX-SUCS-1226-SM-GPI9A 70-79 years, male 206.8
GTEX-NPJ8-1126-SM-GNTAI 40-49 years, male 206.7
GTEX-QCQG-0826-SM-GPI8H 50-59 years, female 203.6
GTEX-Q2AH-1326-SM-GPRWF 40-49 years, male 202.2
GTEX-U3ZM-0826-SM-4DXU6 40-49 years, male 201.5
GTEX-S32W-1126-SM-4AD5V 50-59 years, female 199.4
GTEX-T8EM-1726-SM-GPRWO 40-49 years, male 196.9
GTEX-POMQ-0926-SM-H6Q6H 20-29 years, female 187.8
GTEX-QDVN-1426-SM-GPRWL 50-59 years, male 186.4
GTEX-QXCU-2226-SM-GPI87 50-59 years, male 183.5
GTEX-QEG5-2326-SM-GRR2Z 20-29 years, male 182.2
GTEX-SNMC-0826-SM-4DM66 20-29 years, male 182.2
GTEX-OXRK-1926-SM-GRR1N 50-59 years, female 181.7
GTEX-P4QT-1926-SM-HAUYQ 50-59 years, female 178.0
GTEX-T6MN-2226-SM-EVYAM 50-59 years, male 175.5
GTEX-R55C-1226-SM-GOQY7 40-49 years, male 173.3
GTEX-RNOR-2126-SM-EXURR 50-59 years, female 172.7
GTEX-QLQW-0826-SM-H7OG2 30-39 years, male 171.9
GTEX-S7SF-1126-SM-GQ1CH 20-29 years, female 170.4
GTEX-RM2N-1026-SM-GOQY8 50-59 years, male 167.9
GTEX-N7MT-1826-SM-GQ1C9 60-69 years, female 166.2
GTEX-R53T-1426-SM-H7OG3 50-59 years, female 164.4
GTEX-RWSA-2126-SM-H7OG7 40-49 years, male 163.1
GTEX-R55G-1326-SM-HAUYU 40-49 years, female 162.4
GTEX-RN64-2426-SM-EZ6L2 50-59 years, male 161.5
GTEX-PW2O-1026-SM-GPRWA 20-29 years, male 156.2
GTEX-S95S-0626-SM-EZ6L8 60-69 years, male 155.7
GTEX-QMRM-1326-SM-HAUYS 50-59 years, male 153.7
GTEX-O5YT-1926-SM-H6Q82 20-29 years, male 151.7
GTEX-QEG4-2126-SM-GQ1CE 30-39 years, male 151.6
GTEX-PX3G-1926-SM-GQ1ED 20-29 years, female 149.5
GTEX-OIZH-1926-SM-GPRXO 50-59 years, male 148.8
GTEX-R45C-2426-SM-HL11G 60-69 years, female 146.3
GTEX-T5JW-1026-SM-EZ6LR 20-29 years, female 144.3
GTEX-RUSQ-1326-SM-GQ1EA 50-59 years, male 141.4
GTEX-N7MS-2126-SM-GRR2X 60-69 years, male 139.7
GTEX-OHPM-1926-SM-H7OG1 50-59 years, male 137.8
GTEX-S4Q7-0926-SM-4AD5D 20-29 years, male 135.6
GTEX-U3ZN-1226-SM-4DXUD 30-39 years, female 134.3
GTEX-Q2AI-1026-SM-GRR3I 40-49 years, male 132.0
GTEX-S4UY-0926-SM-4AD6O 40-49 years, female 131.7
GTEX-P44H-2226-SM-E9U4P 40-49 years, male 127.2
GTEX-U3ZH-0826-SM-H6Q7I 30-39 years, male 125.6
GTEX-QLQ7-1226-SM-GOQYE 60-69 years, male 122.5
GTEX-T6MO-0926-SM-GPRWN 40-49 years, female 111.7
GTEX-P4PP-1926-SM-HAUZM 30-39 years, female 111.3
GTEX-PWCY-1126-SM-H7OGX 20-29 years, female 111.0
GTEX-S3XE-1226-SM-4AD4L 50-59 years, male 110.2
GTEX-OOBK-1926-SM-HAUZL 40-49 years, male 104.3
GTEX-OHPL-1926-SM-HAV18 60-69 years, female 103.9
GTEX-PWN1-1926-SM-HAUZN 40-49 years, female 102.8
GTEX-SNOS-0526-SM-4DM54 40-49 years, male 99.4
Show allShow less

URINARY BLADDER - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

311.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Bladder
Scaled Tags Per Million: 311.6
FF:10011-101C2 55,58,79 years, mixed 311.6

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