MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.6 nTPM
HPA Brain:8.4 nTPM
GTEx:16.6 nTPM
FANTOM5:6.5 Scaled Tags Per Million
Pig:24.4 nTPM
Mouse:21.6 nTPM
Allen mouse:1.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 8.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 6.8
2586 Male, age 75, left hemisphere 9.4
2828 Female, age 72, unknown 8.9
1827 Male, age 72, unknown 8.8
2019 Male, age 18, unknown 7.4
2219 Male, age 76, both hemispheres 6.3
1870 Female, age 42, unknown 6.0
2666 Male, age 74, left hemisphere 6.0
1833 Male, age 53, unknown 5.5
2411 Female, age 72, unknown 5.4
1830 Male, age 51, unknown 4.3
Dorsal raphe nucleus
nTPM: 6.7
2298 Female, age 72, unknown 8.1
1828 Male, age 53, unknown 7.7
2047 Male, age 72, unknown 6.5
2016 Female, age 72, unknown 6.0
2750 Male, age 76, both hemispheres 5.1
Inferior colliculus
nTPM: 7.8
1890 Male, age 53, unknown 10.1
2097 Female, age 72, unknown 8.7
1848 Female, age 42, unknown 7.0
2849 Male, age 72, unknown 5.3
Median raphe nucleus
nTPM: 4.9
2220 Male, age 76, midline 4.9
Periaquaductal grey, anterior
nTPM: 6.2
1795 Male, age 51, unknown 7.0
2502 Female, age 75, unknown 6.1
1947 Male, age 18, unknown 5.5
Periaquaductal grey, dorsal
nTPM: 5.4
1831 Male, age 72, unknown 7.7
1840 Male, age 53, unknown 5.3
2850 Male, age 76, both hemispheres 4.4
2464 Female, age 72, unknown 4.1
Periaquaductal grey, lateral
nTPM: 5.3
2053 Male, age 18, unknown 6.5
2272 Male, age 74, both hemispheres 5.1
2140 Male, age 76, both hemispheres 4.4
Pretectal area
nTPM: 8.4
1816 Male, age 51, unknown 14.0
1944 Female, age 72, unknown 12.5
2007 Male, age 72, unknown 11.8
1817 Female, age 42, unknown 10.3
1815 Male, age 53, unknown 9.9
2667 Female, age 75, unknown 7.9
2273 Male, age 74, both hemispheres 6.0
2316 Male, age 76, right hemisphere 5.5
2825 Male, age 18, unknown 5.4
2407 Male, age 75, both hemispheres 5.1
2224 Female, age 72, unknown 3.7
Red nucleus
nTPM: 6.8
1821 Female, age 72, unknown 9.3
2725 Female, age 75, unknown 8.5
2503 Female, age 72, unknown 8.3
2823 Male, age 76, right hemisphere 8.2
1954 Female, age 42, unknown 8.1
2785 Male, age 18, unknown 7.7
1904 Male, age 53, unknown 6.0
2227 Male, age 72, unknown 5.6
2588 Male, age 74, left hemisphere 5.6
1865 Male, age 51, unknown 5.5
2769 Male, age 72, unknown 5.4
2584 Male, age 75, left hemisphere 4.0
Substantia nigra
nTPM: 6.5
1889 Female, age 72, unknown 9.4
1916 Female, age 42, unknown 8.9
2665 Male, age 74, both hemispheres 7.5
1851 Male, age 51, unknown 6.8
2699 Male, age 18, unknown 6.2
2583 Male, age 75, right hemisphere 6.0
2409 Female, age 72, unknown 5.5
1941 Male, age 53, unknown 5.3
2590 Female, age 75, unknown 5.2
2241 Male, age 72, unknown 3.9
Superior colliculus
nTPM: 7.2
2664 Male, age 75, both hemispheres 8.6
2087 Female, age 72, unknown 8.3
1895 Male, age 76, right hemisphere 7.9
1995 Male, age 72, unknown 7.9
1796 Male, age 53, unknown 7.8
2261 Male, age 18, unknown 7.3
2668 Female, age 75, unknown 6.7
2587 Male, age 74, left hemisphere 6.4
1913 Female, age 42, unknown 5.7
1839 Male, age 51, unknown 5.1
Ventral tegmental area
nTPM: 5.2
1915 Female, age 42, unknown 6.8
1942 Male, age 51, unknown 5.8
2218 Male, age 76, both hemispheres 5.5
2410 Female, age 72, unknown 5.1
2223 Female, age 72, unknown 4.7
2021 Male, age 53, unknown 3.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 16.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.6
Samples: 183

Max nTPM: 34.9
Min nTPM: 5.3
Std nTPM: 5.3
Median nTPM: 16.4
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 34.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 34.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 31.9
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 29.4
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 29.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 27.7
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 27.7
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 27.1
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 26.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 25.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 25.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 6.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 6.5
FF:10158-103A5 76 years, female 6.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 24.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 16.4
Samples: 4

Max nTPM: 22.3
Min nTPM: 12.7
Sample A Female 22.3
Sample B Female 14.3
Sample C Male 16.4
Sample D Male 12.7
Midbrain
nTPM: 20.1
Samples: 4

Max nTPM: 25.8
Min nTPM: 14.0
Sample A Female 20.6
Sample B Female 14.0
Sample C Male 25.8
Sample D Male 20.0
Periaqueductal gray
nTPM: 15.6
Samples: 3

Max nTPM: 17.0
Min nTPM: 14.3
Sample B Female 14.3
Sample C Male 17.0
Sample D Male 15.5
Superior colliculi
nTPM: 24.4
Samples: 4

Max nTPM: 29.0
Min nTPM: 21.7
Sample A Female 24.6
Sample B Female 22.1
Sample C Male 29.0
Sample D Male 21.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 21.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.6
Samples: 4

Max nTPM: 23.3
Min nTPM: 19.5
Sample A Male 23.3
Sample B Male 19.5
Sample C Female 21.1
Sample D Female 22.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
68666529 Antisense, RP_050126_02_D12, Mouse strain C57BL/6J (56 days, male) 1.1

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