HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:31.2 nTPM
HPA Brain:30.4 nTPM
GTEx:31.2 nTPM
FANTOM5:5.1 Scaled Tags Per Million
Pig:39.3 nTPM
Mouse:100.6 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA044833Antibody HPA052083
Glial cells Not detectedMedium
Neuronal cells MediumHigh




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 30.4
Sample id Sample description nTPM
Hippocampus
nTPM: 28.9
1898 Male, age 80, left hemisphere 31.5
2529 Female, age 94, left hemisphere 30.4
1855 Male, age 76, left hemisphere 29.6
2621 Female, age 67, right hemisphere 29.1
1911 Female, age 85, right hemisphere 28.5
2148 Female, age 91, left hemisphere 24.6
Dentate gyrus
nTPM: 26.3
2010 Male, age 76, both hemispheres 32.4
1927 Female, age 91, both hemispheres 26.6
2530 Female, age 94, left hemisphere 26.2
2246 Female, age 85, both hemispheres 26.0
2531 Female, age 67, both hemispheres 24.6
2528 Male, age 74, both hemispheres 21.8
Entorhinal gyrus
nTPM: 25.0
2117 Female, age 91, right hemisphere 30.6
1938 Female, age 85, left hemisphere 27.1
2764 Male, age 80, right hemisphere 25.3
1787 Male, age 76, left hemisphere 24.9
2686 Male, age 75, right hemisphere 24.0
2613 Female, age 94, left hemisphere 17.9
Hippocampus, CA1
nTPM: 30.4
2749 Male, age 80, left hemisphere 43.0
2527 Male, age 74, both hemispheres 29.7
2045 Male, age 76, both hemispheres 28.5
1873 Female, age 85, both hemispheres 27.5
2082 Female, age 91, right hemisphere 23.4
Hippocampus, CA2
nTPM: 29.0
1940 Female, age 85, left hemisphere 34.2
1892 Male, age 76, both hemispheres 32.3
2249 Male, age 74, both hemispheres 30.6
1963 Male, age 80, left hemisphere 29.1
2437 Female, age 94, left hemisphere 24.7
2113 Female, age 91, right hemisphere 23.3
Hippocampus, CA3
nTPM: 28.8
2137 Male, age 80, left hemisphere 37.4
1867 Male, age 76, both hemispheres 37.1
1891 Female, age 85, both hemispheres 30.4
2436 Male, age 74, both hemispheres 25.7
2861 Female, age 67, both hemispheres 22.9
2620 Female, age 94, left hemisphere 19.5
Parahippocampal cortex
nTPM: 24.4
2018 Male, age 76, both hemispheres 27.0
2245 Female, age 91, both hemispheres 26.8
1850 Male, age 80, both hemispheres 26.5
2692 Male, age 74, both hemispheres 25.9
2250 Female, age 67, right hemisphere 25.2
1933 Female, age 85, both hemispheres 24.6
1990 Female, age 91, right hemisphere 24.5
2532 Female, age 72, left hemisphere 22.5
2622 Female, age 67, right hemisphere 21.0
2693 Female, age 94, both hemispheres 20.2
Perirhinal gyrus
nTPM: 24.7
1841 Female, age 85, right hemisphere 28.3
1794 Male, age 80, right hemisphere 26.0
1847 Female, age 91, left hemisphere 25.3
2521 Female, age 94, right hemisphere 22.2
2848 Male, age 76, right hemisphere 21.9
Subiculum
nTPM: 28.6
2042 Male, age 76, both hemispheres 34.1
1901 Male, age 80, both hemispheres 33.7
2438 Female, age 94, left hemisphere 29.1
1977 Female, age 85, both hemispheres 28.3
2729 Female, age 91, right hemisphere 23.7
2619 Male, age 74, both hemispheres 22.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 31.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 31.2
Samples: 255

Max nTPM: 142.7
Min nTPM: 0.0
Std nTPM: 24.6
Median nTPM: 26.5
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 142.7
GTEX-1JMQL-0011-R1a-SM-F3K4U 50-59 years, female 111.0
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 93.3
GTEX-12696-0011-R1a-SM-GHWPW 60-69 years, male 92.3
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 89.6
GTEX-1PWST-0011-R1b-SM-F2I38 70-79 years, male 83.0
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 82.9
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 81.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 80.5
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 75.2
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 74.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 5.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 5.1
FF:10153-102I9 76 years, female 9.1
FF:10169-103B7 60 years, female 1.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 39.3
Pig sample Sample description nTPM
Subiculum
nTPM: 32.8
Samples: 4

Max nTPM: 40.8
Min nTPM: 27.4
Sample A Female 40.8
Sample B Female 32.8
Sample C Male 30.3
Sample D Male 27.4
Dorsal hippocampus
nTPM: 39.3
Samples: 4

Max nTPM: 46.3
Min nTPM: 29.5
Sample A Female 46.3
Sample B Female 38.0
Sample C Male 43.5
Sample D Male 29.5
Entorhinal cortex
nTPM: 32.9
Samples: 4

Max nTPM: 38.3
Min nTPM: 26.5
Sample A Female 33.4
Sample B Female 38.3
Sample C Male 33.4
Sample D Male 26.5
Ventral hippocampus
nTPM: 36.4
Samples: 4

Max nTPM: 43.6
Min nTPM: 29.7
Sample A Female 35.2
Sample B Female 29.7
Sample C Male 43.6
Sample D Male 37.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 100.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 81.4
Samples: 4

Max nTPM: 90.5
Min nTPM: 72.6
Sample A Male 87.1
Sample B Male 72.6
Sample C Female 90.5
Sample D Female 75.4
Hippocampal formation
nTPM: 100.6
Samples: 4

Max nTPM: 105.5
Min nTPM: 93.1
Sample A Male 101.9
Sample B Male 93.1
Sample C Female 102.0
Sample D Female 105.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.1
70194019 Antisense, RP_050517_01_D09, Mouse strain C57BL/6J (56 days, male) 0.1

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