MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.8 nTPM
HPA Brain:44.0 nTPM
GTEx:15.8 nTPM
FANTOM5:116.7 Scaled Tags Per Million
Pig:29.0 nTPM
Mouse:2.5 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 44.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 29.1
2666 Male, age 74, left hemisphere 39.4
2828 Female, age 72, unknown 37.3
1833 Male, age 53, unknown 30.5
1870 Female, age 42, unknown 29.4
2586 Male, age 75, left hemisphere 29.2
2019 Male, age 18, unknown 28.5
1830 Male, age 51, unknown 28.2
1827 Male, age 72, unknown 25.8
2411 Female, age 72, unknown 25.0
2219 Male, age 76, both hemispheres 18.1
Dorsal raphe nucleus
nTPM: 36.2
2016 Female, age 72, unknown 45.8
2298 Female, age 72, unknown 38.1
2750 Male, age 76, both hemispheres 35.3
1828 Male, age 53, unknown 33.7
2047 Male, age 72, unknown 28.0
Inferior colliculus
nTPM: 26.1
2097 Female, age 72, unknown 28.5
1890 Male, age 53, unknown 28.0
1848 Female, age 42, unknown 25.7
2849 Male, age 72, unknown 22.1
Median raphe nucleus
nTPM: 33.3
2220 Male, age 76, midline 33.3
Periaquaductal grey, anterior
nTPM: 27.0
1795 Male, age 51, unknown 33.5
1947 Male, age 18, unknown 26.0
2502 Female, age 75, unknown 21.4
Periaquaductal grey, dorsal
nTPM: 32.4
1831 Male, age 72, unknown 44.2
2850 Male, age 76, both hemispheres 32.6
1840 Male, age 53, unknown 26.9
2464 Female, age 72, unknown 25.8
Periaquaductal grey, lateral
nTPM: 38.5
2272 Male, age 74, both hemispheres 42.4
2140 Male, age 76, both hemispheres 38.9
2053 Male, age 18, unknown 34.3
Pretectal area
nTPM: 29.8
2316 Male, age 76, right hemisphere 47.1
2407 Male, age 75, both hemispheres 37.8
2273 Male, age 74, both hemispheres 36.0
1944 Female, age 72, unknown 31.0
2007 Male, age 72, unknown 28.4
1815 Male, age 53, unknown 28.3
1817 Female, age 42, unknown 27.7
2224 Female, age 72, unknown 27.6
2825 Male, age 18, unknown 26.4
2667 Female, age 75, unknown 19.8
1816 Male, age 51, unknown 17.5
Red nucleus
nTPM: 31.4
1865 Male, age 51, unknown 42.2
2503 Female, age 72, unknown 41.7
2725 Female, age 75, unknown 36.7
2227 Male, age 72, unknown 35.4
2769 Male, age 72, unknown 33.0
1904 Male, age 53, unknown 32.2
2823 Male, age 76, right hemisphere 31.0
2785 Male, age 18, unknown 30.4
2584 Male, age 75, left hemisphere 29.1
1954 Female, age 42, unknown 24.8
1821 Female, age 72, unknown 22.4
2588 Male, age 74, left hemisphere 17.6
Substantia nigra
nTPM: 44.0
2590 Female, age 75, unknown 73.9
2699 Male, age 18, unknown 57.4
2665 Male, age 74, both hemispheres 49.2
2409 Female, age 72, unknown 46.2
1916 Female, age 42, unknown 43.1
1851 Male, age 51, unknown 41.6
2583 Male, age 75, right hemisphere 40.5
1941 Male, age 53, unknown 34.3
2241 Male, age 72, unknown 30.0
1889 Female, age 72, unknown 23.4
Superior colliculus
nTPM: 33.7
1913 Female, age 42, unknown 52.0
1995 Male, age 72, unknown 44.1
2587 Male, age 74, left hemisphere 38.5
2087 Female, age 72, unknown 34.4
1839 Male, age 51, unknown 30.9
1796 Male, age 53, unknown 30.1
2261 Male, age 18, unknown 30.0
2664 Male, age 75, both hemispheres 29.6
2668 Female, age 75, unknown 27.4
1895 Male, age 76, right hemisphere 20.0
Ventral tegmental area
nTPM: 40.6
2021 Male, age 53, unknown 55.4
1915 Female, age 42, unknown 41.8
1942 Male, age 51, unknown 40.3
2218 Male, age 76, both hemispheres 40.2
2410 Female, age 72, unknown 33.7
2223 Female, age 72, unknown 32.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 15.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.8
Samples: 139

Max nTPM: 75.3
Min nTPM: 0.2
Std nTPM: 15.4
Median nTPM: 10.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 75.3
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 72.5
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 69.0
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 66.5
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 58.4
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 57.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 44.3
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 44.0
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 42.1
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 41.0
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 40.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 116.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 116.7
FF:10158-103A5 76 years, female 116.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 29.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 26.2
Samples: 4

Max nTPM: 27.4
Min nTPM: 24.9
Sample A Female 27.4
Sample B Female 24.9
Sample C Male 27.2
Sample D Male 25.1
Midbrain
nTPM: 20.8
Samples: 4

Max nTPM: 33.4
Min nTPM: 11.7
Sample A Female 33.4
Sample B Female 25.8
Sample C Male 11.7
Sample D Male 12.2
Periaqueductal gray
nTPM: 29.0
Samples: 3

Max nTPM: 35.4
Min nTPM: 24.7
Sample B Female 26.9
Sample C Male 35.4
Sample D Male 24.7
Superior colliculi
nTPM: 15.6
Samples: 4

Max nTPM: 21.0
Min nTPM: 11.1
Sample A Female 21.0
Sample B Female 11.1
Sample C Male 13.8
Sample D Male 16.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 2.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.5
Samples: 4

Max nTPM: 2.9
Min nTPM: 2.1
Sample A Male 2.7
Sample B Male 2.1
Sample C Female 2.9
Sample D Female 2.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
77464984 Antisense, RP_070129_02_F09, Mouse strain C57BL/6J (56 days, male) 0.0

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