HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni
Consensus:65.5 nTPM
HPA Brain:99.3 nTPM
GTEx:65.5 nTPM
FANTOM5:87.7 Scaled Tags Per Million
Pig:30.7 nTPM
Mouse:60.1 nTPM
Allen mouse:7.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA025961Antibody CAB032582
Glial cells MediumLow
Neuronal cells LowLow




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 99.3
Sample id Sample description nTPM
Hippocampus
nTPM: 80.4
2529 Female, age 94, left hemisphere 102.3
1911 Female, age 85, right hemisphere 84.7
2148 Female, age 91, left hemisphere 79.7
2621 Female, age 67, right hemisphere 75.9
1898 Male, age 80, left hemisphere 75.8
1855 Male, age 76, left hemisphere 63.9
Dentate gyrus
nTPM: 82.7
2530 Female, age 94, left hemisphere 98.8
2528 Male, age 74, both hemispheres 94.6
2246 Female, age 85, both hemispheres 89.1
2531 Female, age 67, both hemispheres 82.4
2010 Male, age 76, both hemispheres 72.2
1927 Female, age 91, both hemispheres 59.1
Entorhinal gyrus
nTPM: 95.6
2117 Female, age 91, right hemisphere 126.7
2764 Male, age 80, right hemisphere 104.2
2613 Female, age 94, left hemisphere 90.4
2686 Male, age 75, right hemisphere 90.0
1787 Male, age 76, left hemisphere 82.6
1938 Female, age 85, left hemisphere 79.3
Hippocampus, CA1
nTPM: 74.4
2527 Male, age 74, both hemispheres 96.3
2082 Female, age 91, right hemisphere 85.8
2749 Male, age 80, left hemisphere 70.7
1873 Female, age 85, both hemispheres 69.0
2045 Male, age 76, both hemispheres 50.0
Hippocampus, CA2
nTPM: 80.6
2437 Female, age 94, left hemisphere 90.4
2113 Female, age 91, right hemisphere 88.7
2249 Male, age 74, both hemispheres 88.4
1940 Female, age 85, left hemisphere 87.0
1963 Male, age 80, left hemisphere 81.0
1892 Male, age 76, both hemispheres 48.4
Hippocampus, CA3
nTPM: 73.8
1891 Female, age 85, both hemispheres 90.9
2861 Female, age 67, both hemispheres 78.1
2620 Female, age 94, left hemisphere 73.7
2436 Male, age 74, both hemispheres 69.3
2137 Male, age 80, left hemisphere 66.9
1867 Male, age 76, both hemispheres 63.9
Parahippocampal cortex
nTPM: 82.6
2532 Female, age 72, left hemisphere 96.7
2692 Male, age 74, both hemispheres 95.7
1990 Female, age 91, right hemisphere 87.5
2018 Male, age 76, both hemispheres 87.4
2250 Female, age 67, right hemisphere 83.3
2245 Female, age 91, both hemispheres 82.6
1933 Female, age 85, both hemispheres 78.0
2622 Female, age 67, right hemisphere 77.5
1850 Male, age 80, both hemispheres 70.2
2693 Female, age 94, both hemispheres 66.9
Perirhinal gyrus
nTPM: 67.8
2521 Female, age 94, right hemisphere 75.4
1794 Male, age 80, right hemisphere 70.7
1847 Female, age 91, left hemisphere 68.1
1841 Female, age 85, right hemisphere 62.9
2848 Male, age 76, right hemisphere 62.0
Subiculum
nTPM: 99.3
2042 Male, age 76, both hemispheres 124.4
1901 Male, age 80, both hemispheres 103.6
2619 Male, age 74, both hemispheres 101.4
2438 Female, age 94, left hemisphere 92.4
1977 Female, age 85, both hemispheres 92.1
2729 Female, age 91, right hemisphere 81.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 65.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 65.5
Samples: 255

Max nTPM: 215.0
Min nTPM: 33.1
Std nTPM: 26.1
Median nTPM: 58.1
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 215.0
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 181.1
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 157.1
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 155.9
GTEX-ZYFD-0011-R1b-SM-GRR1T 50-59 years, male 145.3
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 143.2
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 135.1
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 131.7
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 127.2
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 122.7
GTEX-11TTK-0011-R1b-SM-GIN92 60-69 years, female 119.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 87.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 87.7
FF:10153-102I9 76 years, female 102.7
FF:10169-103B7 60 years, female 72.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 30.7
Pig sample Sample description nTPM
Subiculum
nTPM: 22.8
Samples: 4

Max nTPM: 26.9
Min nTPM: 19.2
Sample A Female 26.9
Sample B Female 22.1
Sample C Male 23.1
Sample D Male 19.2
Dorsal hippocampus
nTPM: 30.7
Samples: 4

Max nTPM: 38.7
Min nTPM: 19.0
Sample A Female 38.7
Sample B Female 27.0
Sample C Male 38.2
Sample D Male 19.0
Entorhinal cortex
nTPM: 18.7
Samples: 4

Max nTPM: 20.2
Min nTPM: 17.7
Sample A Female 18.7
Sample B Female 18.1
Sample C Male 20.2
Sample D Male 17.7
Ventral hippocampus
nTPM: 28.9
Samples: 4

Max nTPM: 38.0
Min nTPM: 19.0
Sample A Female 25.9
Sample B Female 19.0
Sample C Male 32.7
Sample D Male 38.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 60.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 45.6
Samples: 4

Max nTPM: 47.7
Min nTPM: 43.1
Sample A Male 47.1
Sample B Male 47.7
Sample C Female 43.1
Sample D Female 44.5
Hippocampal formation
nTPM: 60.1
Samples: 4

Max nTPM: 69.5
Min nTPM: 53.0
Sample A Male 53.0
Sample B Male 57.6
Sample C Female 69.5
Sample D Female 60.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 7.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.9
75214940 Antisense, RP_060427_01_A06, Mouse strain C57BL/6J (56 days, male) 7.9

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