We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
S100B
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • S100B
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:567.8 nTPM
FANTOM5:270.8 Scaled Tags Per Million
Pig:1339.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA015768Antibody CAB000073Antibody CAB078196
Glial cells HighHighHigh
Neuronal cells Not detectedMediumNot detected







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

567.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 567.8
Samples: 300

Max nTPM: 1676.3
Min nTPM: 149.7
Std nTPM: 253.4
Median nTPM: 518.2
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 1676.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1506.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1256.4
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 1253.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1225.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 1207.9
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 1200.7
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 1181.8
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 1116.9
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 1107.2
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 1100.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 1088.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1079.6
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 1076.8
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 1072.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1071.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1065.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 1063.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1048.0
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 1033.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 1016.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 989.2
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 976.0
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 974.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 970.6
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 969.0
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 964.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 955.3
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 952.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 928.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 923.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 921.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 916.8
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 915.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 914.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 914.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 912.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 912.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 905.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 892.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 879.1
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 875.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 851.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 846.2
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 823.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 816.3
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 812.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 807.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 805.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 800.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 799.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 798.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 796.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 795.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 776.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 775.8
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 759.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 758.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 745.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 745.0
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 744.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 739.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 732.7
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 730.0
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 723.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 723.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 722.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 712.2
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 710.4
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 709.0
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 708.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 708.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 708.0
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 701.7
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 701.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 698.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 698.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 691.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 689.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 678.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 677.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 675.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 665.3
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 664.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 664.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 663.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 661.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 655.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 651.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 649.1
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 648.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 647.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 643.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 643.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 643.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 642.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 642.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 634.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 633.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 631.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 629.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 627.7
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 627.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 625.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 620.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 619.4
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 615.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 615.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 614.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 613.1
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 611.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 609.9
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 602.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 597.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 593.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 586.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 586.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 585.5
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 581.2
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 579.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 578.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 577.1
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 574.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 570.3
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 563.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 560.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 560.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 560.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 559.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 559.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 559.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 556.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 554.7
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 553.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 553.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 548.8
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 543.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 539.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 535.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 535.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 533.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 532.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 531.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 527.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 526.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 524.7
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 524.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 524.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 521.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 519.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 517.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 515.3
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 508.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 507.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 507.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 502.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 502.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 502.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 500.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 497.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 497.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 496.9
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 495.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 494.9
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 494.5
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 488.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 487.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 484.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 483.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 480.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 479.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 478.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 478.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 477.0
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 476.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 475.7
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 475.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 470.2
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 470.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 468.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 468.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 464.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 464.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 463.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 463.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 462.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 461.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 461.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 458.6
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 458.0
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 454.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 453.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 452.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 452.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 447.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 446.6
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 446.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 446.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 443.5
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 437.0
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 436.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 435.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 433.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 433.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 430.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 429.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 424.3
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 421.6
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 421.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 419.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 418.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 417.9
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 413.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 409.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 407.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 405.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 403.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 402.8
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 402.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 398.2
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 395.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 394.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 393.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 393.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 391.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 388.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 387.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 383.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 381.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 379.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 378.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 376.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 360.3
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 354.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 350.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 346.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 345.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 344.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 340.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 338.6
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 337.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 329.8
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 329.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 329.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 328.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 327.8
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 327.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 326.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 324.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 323.9
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 323.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 323.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 322.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 317.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 316.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 314.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 314.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 313.3
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 312.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 311.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 310.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 307.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 306.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 304.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 303.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 300.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 298.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 295.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 295.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 291.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 286.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 284.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 282.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 281.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 281.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 274.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 269.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 264.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 262.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 257.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 252.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 251.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 250.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 246.4
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 243.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 239.3
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 237.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 236.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 229.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 226.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 219.3
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 216.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 211.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 200.9
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 197.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 194.1
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 193.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 189.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 175.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 149.7
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

270.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 270.8
FF:10164-103B2 76 years, female 270.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1339.7
Pig sample Sample description nTPM
Caudate
nTPM: 1339.7
Samples: 4

Max nTPM: 1487.3
Min nTPM: 1134.1
Sample A Female 1321.1
Sample B Female 1416.3
Sample C Male 1487.3
Sample D Male 1134.1

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo