COLON - Expression summary
Protein expression
Coloni
h
m
l
n
Endothelial cells: Low
Glandular cells: High
Peripheral nerve/ganglion: Medium
RNA expressioni
Consensus:18.2 nTPM
HPA:2.2 nTPM
GTEx:18.2 nTPM
FANTOM5:5.5 Scaled Tags Per Million
COLON - SINGLE CELL RNA EXPRESSION

COLON - Antibody stainingi
Antibody HPA042199Antibody HPA060736
Endothelial cells MediumNot detected
Glandular cells HighHigh
Peripheral nerve/ganglion -Medium



COLON - HPA RNA-seqi
Average nTPMi 2.2
overview
Male, age 54
Colon sample 67
nTPM: 2.9
Cell types%
Glandular cells:
65

Smooth muscle cells:
10

Other cell types:
25
overview
Female, age 57
Colon sample 68
nTPM: 2.3
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55
overview
Male, age 80
Colon sample 69
nTPM: 1.1
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40
overview
Male, age 68
Colon sample 70
nTPM: 3.6
Cell types%
Glandular cells:
35

Smooth muscle cells:
10

Other cell types:
55
overview
Female, age 68
Colon sample 76
nTPM: 3.3
Cell types%
Glandular cells:
25

Smooth muscle cells:
5

Other cell types:
70
overview
Female, age 61
Colon sample 299
nTPM: 1.9
Cell types%
Glandular cells:
5

Smooth muscle cells:
65

Other cell types:
30
overview
Male, age 80
Colon sample 300
nTPM: 0.6
Cell types%
Glandular cells:
15

Smooth muscle cells:
20

Other cell types:
65
overview
Female, age 78
Colon sample 368
nTPM: 1.5
Cell types%
Glandular cells:
45

Smooth muscle cells:
5

Other cell types:
50
overview
Male, age 84
Colon sample 381
nTPM: 2.6
Cell types%
Glandular cells:
50

Smooth muscle cells:
15

Other cell types:
35
overview
Male, age 80
Colon sample 384
nTPM: 1
Cell types%
Glandular cells:
20

Smooth muscle cells:
35

Other cell types:
45
overview
Female, age 78
Colon sample 389
nTPM: 1.8
Cell types%
Glandular cells:
35

Smooth muscle cells:
10

Other cell types:
55
overview
Female, age 69
Colon sample 391
nTPM: 2.9
Cell types%
Glandular cells:
10

Smooth muscle cells:
45

Other cell types:
45
overview
Female, age 72
Colon sample 403
nTPM: 3.8
Cell types%
Glandular cells:
20

Smooth muscle cells:
15

Other cell types:
65

COLON - GTEx RNA-seqi
Max subtype nTPMi 18.2
GTEx sample id Sample description nTPM
Colon - Sigmoid
Average nTPM: 18.2
Samples: 419

Max nTPM: 53.8
Min nTPM: 3.0
Std nTPM: 7.4
Median nTPM: 17.1
GTEX-1KD4Q-2626-SM-HLJQP 40-49 years, male 53.8
GTEX-1IE54-2526-SM-GQ1E5 40-49 years, female 44.7
GTEX-1IL2U-2526-SM-C1YQV 60-69 years, male 41.8
GTEX-1J8EW-2426-SM-CE6T5 60-69 years, female 37.5
GTEX-1NV8Z-2526-SM-F648C 60-69 years, male 37.2
GTEX-11DXY-2026-SM-5N9CZ 60-69 years, male 37.1
GTEX-11ZTS-1526-SM-5N9G7 60-69 years, female 37.1
GTEX-15D79-2826-SM-GPRXP 50-59 years, male 35.5
GTEX-13PVQ-2726-SM-5L3H7 50-59 years, male 35.0
GTEX-13X6J-2826-SM-7EPGA 50-59 years, male 34.8
GTEX-1GMRU-2626-SM-9WPPM 50-59 years, male 34.1
Show allShow less
Colon - Transverse
Average nTPM: 11.5
Samples: 479

Max nTPM: 34.2
Min nTPM: 2.0
Std nTPM: 6.6
Median nTPM: 10.7
GTEX-147JS-2526-SM-5S2Q8 60-69 years, male 34.2
GTEX-1LG7Y-2126-SM-DIPER 50-59 years, male 33.6
GTEX-14BIN-3026-SM-5ZZUS 50-59 years, female 31.5
GTEX-ZVE2-2526-SM-GNINP 50-59 years, male 30.1
GTEX-13S7M-1226-SM-GJ3QW 60-69 years, female 29.9
GTEX-16Z82-2226-SM-6LPJ7 60-69 years, male 28.6
GTEX-1JMLX-2726-SM-CM2SB 50-59 years, male 28.6
GTEX-QESD-1126-SM-H7OFF 20-29 years, male 28.2
GTEX-1E2YA-2626-SM-7MGWW 50-59 years, male 27.9
GTEX-1IGQW-2326-SM-CE6RV 60-69 years, male 27.5
GTEX-17JCI-2626-SM-7EWE6 60-69 years, female 27.4
Show allShow less

COLON - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 5.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Colon
Scaled Tags Per Million: 5.5
FF:10014-101C5 62,83,84 years, mixed 5.5

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo