HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.6 nTPM
HPA Brain:38.0 nTPM
GTEx:8.6 nTPM
FANTOM5:31.9 Scaled Tags Per Million
Pig:34.9 nTPM
Mouse:8.5 nTPM
Allen mouse:2.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 38.0
Sample id Sample description nTPM
Hippocampus
nTPM: 30.6
1898 Male, age 80, left hemisphere 37.1
2621 Female, age 67, right hemisphere 35.6
2148 Female, age 91, left hemisphere 34.8
1855 Male, age 76, left hemisphere 31.1
1911 Female, age 85, right hemisphere 22.6
2529 Female, age 94, left hemisphere 22.5
Dentate gyrus
nTPM: 31.9
2531 Female, age 67, both hemispheres 38.6
1927 Female, age 91, both hemispheres 38.0
2528 Male, age 74, both hemispheres 31.2
2530 Female, age 94, left hemisphere 30.2
2246 Female, age 85, both hemispheres 27.3
2010 Male, age 76, both hemispheres 26.3
Entorhinal gyrus
nTPM: 33.6
2613 Female, age 94, left hemisphere 51.4
2764 Male, age 80, right hemisphere 36.5
1787 Male, age 76, left hemisphere 32.3
2686 Male, age 75, right hemisphere 32.3
1938 Female, age 85, left hemisphere 30.3
2117 Female, age 91, right hemisphere 18.9
Hippocampus, CA1
nTPM: 36.1
2749 Male, age 80, left hemisphere 61.9
2527 Male, age 74, both hemispheres 35.4
1873 Female, age 85, both hemispheres 29.0
2045 Male, age 76, both hemispheres 28.0
2082 Female, age 91, right hemisphere 26.4
Hippocampus, CA2
nTPM: 31.2
1892 Male, age 76, both hemispheres 36.8
2437 Female, age 94, left hemisphere 34.9
1963 Male, age 80, left hemisphere 32.7
2249 Male, age 74, both hemispheres 31.0
2113 Female, age 91, right hemisphere 26.9
1940 Female, age 85, left hemisphere 25.1
Hippocampus, CA3
nTPM: 36.0
2137 Male, age 80, left hemisphere 49.9
2861 Female, age 67, both hemispheres 45.1
2620 Female, age 94, left hemisphere 38.4
1867 Male, age 76, both hemispheres 32.6
2436 Male, age 74, both hemispheres 29.0
1891 Female, age 85, both hemispheres 21.0
Parahippocampal cortex
nTPM: 32.3
2245 Female, age 91, both hemispheres 41.9
2250 Female, age 67, right hemisphere 38.2
1990 Female, age 91, right hemisphere 36.0
2693 Female, age 94, both hemispheres 35.1
2622 Female, age 67, right hemisphere 32.2
1933 Female, age 85, both hemispheres 30.8
1850 Male, age 80, both hemispheres 30.1
2692 Male, age 74, both hemispheres 28.4
2532 Female, age 72, left hemisphere 25.2
2018 Male, age 76, both hemispheres 24.9
Perirhinal gyrus
nTPM: 38.0
1847 Female, age 91, left hemisphere 52.9
2521 Female, age 94, right hemisphere 50.5
1794 Male, age 80, right hemisphere 36.0
1841 Female, age 85, right hemisphere 27.6
2848 Male, age 76, right hemisphere 23.1
Subiculum
nTPM: 27.9
2438 Female, age 94, left hemisphere 33.8
2619 Male, age 74, both hemispheres 31.2
1901 Male, age 80, both hemispheres 30.1
1977 Female, age 85, both hemispheres 29.1
2729 Female, age 91, right hemisphere 24.5
2042 Male, age 76, both hemispheres 18.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 8.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 8.6
Samples: 255

Max nTPM: 26.3
Min nTPM: 0.2
Std nTPM: 5.5
Median nTPM: 7.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 26.3
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 24.2
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 23.6
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 23.3
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 22.6
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 22.4
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 21.7
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 21.3
GTEX-15SHU-0011-R1b-SM-H6Q7U 40-49 years, female 20.8
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 20.7
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 20.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 31.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 31.9
FF:10169-103B7 60 years, female 47.7
FF:10153-102I9 76 years, female 16.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 34.9
Pig sample Sample description nTPM
Subiculum
nTPM: 34.1
Samples: 4

Max nTPM: 43.4
Min nTPM: 28.2
Sample A Female 43.4
Sample B Female 29.0
Sample C Male 35.6
Sample D Male 28.2
Dorsal hippocampus
nTPM: 28.5
Samples: 4

Max nTPM: 39.4
Min nTPM: 17.8
Sample A Female 39.4
Sample B Female 34.5
Sample C Male 22.2
Sample D Male 17.8
Entorhinal cortex
nTPM: 31.7
Samples: 4

Max nTPM: 38.7
Min nTPM: 24.2
Sample A Female 38.7
Sample B Female 24.2
Sample C Male 36.2
Sample D Male 27.7
Ventral hippocampus
nTPM: 34.9
Samples: 4

Max nTPM: 48.5
Min nTPM: 22.5
Sample A Female 37.6
Sample B Female 22.5
Sample C Male 48.5
Sample D Male 31.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 8.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 8.5
Samples: 4

Max nTPM: 10.7
Min nTPM: 7.3
Sample A Male 7.8
Sample B Male 8.1
Sample C Female 7.3
Sample D Female 10.7
Hippocampal formation
nTPM: 6.4
Samples: 4

Max nTPM: 7.8
Min nTPM: 3.7
Sample A Male 3.7
Sample B Male 7.8
Sample C Female 7.4
Sample D Female 6.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 2.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.9
2098 Antisense, RP_Baylor_102619, Mouse strain C57BL/6J (56 days, male) 4.2
81671342 Antisense, RP_080916_03_H06, Mouse strain C57BL/6J (56 days, male) 3.5
2097 Antisense, RP_Baylor_102619, Mouse strain C57BL/6J (56 days, male) 1.7
81790724 Antisense, RP_090820_05_A11, Mouse strain C57BL/6J (56 days, male) 0.9

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