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  • TISSUE

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  • RPL8
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: Medium
Enterocytes: High
Enterocytes - Microvilli: Not detected
Goblet cells: Low
Paneth cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:828.4 nTPM
HPA:585.9 nTPM
GTEx:828.4 nTPM
FANTOM5:367.5 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA045095Antibody HPA050165
Endocrine cells -Medium
Enterocytes -High
Enterocytes - Microvilli -Not detected
Glandular cells High-
Goblet cells -Low
Paneth cells -Medium





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

585.9
overview
Male, age 65
Small intestine sample 232
nTPM: 825
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 664
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 485.9
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 368.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

828.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 828.4
Samples: 207

Max nTPM: 1412.9
Min nTPM: 508.6
Std nTPM: 181.0
Median nTPM: 801.1
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 1412.9
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 1364.8
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1318.7
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 1305.8
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1247.5
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 1241.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 1221.0
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 1204.9
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 1197.4
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 1184.4
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1175.9
GTEX-1192X-2526-SM-59868 50-59 years, male 1170.6
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1145.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 1133.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 1131.0
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 1125.7
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 1123.3
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 1118.6
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 1117.1
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1108.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 1095.7
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1086.7
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 1084.7
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 1084.6
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1081.6
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1060.4
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 1057.9
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 1052.6
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 1038.6
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 1027.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1021.3
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 1014.2
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 1010.8
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 1006.4
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 1003.8
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1002.9
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 995.5
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 990.0
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 989.4
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 984.6
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 982.8
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 978.4
GTEX-14PK6-1626-SM-6871I 70-79 years, female 977.3
GTEX-13O61-1326-SM-5KM31 60-69 years, male 974.3
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 966.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 965.3
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 963.5
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 954.2
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 944.7
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 935.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 934.2
GTEX-1C475-1426-SM-793CH 40-49 years, female 919.6
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 918.9
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 918.0
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 916.2
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 913.4
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 912.0
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 911.1
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 907.2
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 906.0
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 905.7
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 904.1
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 899.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 898.6
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 897.4
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 895.1
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 893.3
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 884.1
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 872.2
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 869.2
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 868.4
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 866.1
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 865.9
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 862.4
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 860.8
GTEX-13113-1226-SM-5EGHT 60-69 years, female 857.2
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 855.9
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 851.1
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 849.5
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 846.3
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 844.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 841.5
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 840.8
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 834.8
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 833.9
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 833.8
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 831.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 830.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 829.6
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 826.8
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 826.3
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 825.2
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 825.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 823.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 822.0
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 820.1
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 818.1
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 815.4
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 814.6
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 813.4
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 808.0
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 805.3
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 804.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 801.1
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 799.2
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 793.5
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 793.0
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 792.9
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 790.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 786.1
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 785.7
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 782.1
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 781.9
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 781.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 781.2
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 780.2
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 780.1
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 776.8
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 774.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 774.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 773.0
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 771.5
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 767.0
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 765.7
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 761.5
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 758.7
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 752.8
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 751.2
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 748.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 745.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 745.0
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 743.9
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 742.3
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 739.4
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 738.9
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 734.5
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 730.2
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 722.2
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 721.7
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 718.1
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 717.9
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 717.3
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 717.0
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 715.9
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 713.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 713.6
GTEX-13111-1426-SM-5DUW3 50-59 years, male 712.4
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 710.5
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 709.2
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 709.1
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 706.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 700.9
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 696.4
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 689.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 688.9
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 688.0
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 686.7
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 685.1
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 682.4
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 681.6
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 677.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 675.5
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 675.0
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 671.0
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 670.6
GTEX-178AV-1226-SM-GOR11 40-49 years, male 667.8
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 667.6
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 667.5
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 666.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 659.1
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 656.1
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 653.8
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 653.3
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 649.3
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 648.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 648.3
GTEX-YFCO-1326-SM-664NV 40-49 years, male 647.1
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 644.4
GTEX-1122O-1326-SM-5H11F 60-69 years, female 644.0
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 644.0
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 641.4
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 640.0
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 639.4
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 635.8
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 635.3
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 633.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 632.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 632.3
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 631.1
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 626.4
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 619.2
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 619.1
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 616.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 601.5
GTEX-14PN3-2026-SM-68729 60-69 years, female 600.3
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 598.5
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 584.0
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 564.7
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 563.5
GTEX-ZTSS-0926-SM-59865 40-49 years, male 551.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 540.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 537.4
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 532.3
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 526.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 524.4
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 520.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 508.6
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

367.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 367.5
FF:10024-101D6 15,40,85 years, mixed 367.5

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KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

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