MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:51.6 nTPM
HPA Brain:41.6 nTPM
GTEx:51.6 nTPM
FANTOM5:96.7 Scaled Tags Per Million
Pig:95.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 41.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.6
2586 Male, age 75, left hemisphere 40.3
2411 Female, age 72, unknown 40.0
2019 Male, age 18, unknown 39.9
1870 Female, age 42, unknown 39.3
1833 Male, age 53, unknown 39.1
1830 Male, age 51, unknown 38.9
1827 Male, age 72, unknown 36.5
2219 Male, age 76, both hemispheres 31.9
2828 Female, age 72, unknown 31.2
2666 Male, age 74, left hemisphere 28.5
Dorsal raphe nucleus
nTPM: 40.0
2298 Female, age 72, unknown 45.7
2750 Male, age 76, both hemispheres 41.3
2016 Female, age 72, unknown 40.0
2047 Male, age 72, unknown 36.5
1828 Male, age 53, unknown 36.4
Inferior colliculus
nTPM: 38.8
2097 Female, age 72, unknown 47.0
1890 Male, age 53, unknown 38.1
1848 Female, age 42, unknown 37.3
2849 Male, age 72, unknown 32.9
Median raphe nucleus
nTPM: 38.0
2220 Male, age 76, midline 38.0
Periaquaductal grey, anterior
nTPM: 40.4
2502 Female, age 75, unknown 45.0
1947 Male, age 18, unknown 44.8
1795 Male, age 51, unknown 31.5
Periaquaductal grey, dorsal
nTPM: 38.3
2464 Female, age 72, unknown 38.9
1831 Male, age 72, unknown 38.8
2850 Male, age 76, both hemispheres 38.6
1840 Male, age 53, unknown 36.9
Periaquaductal grey, lateral
nTPM: 37.4
2272 Male, age 74, both hemispheres 40.0
2140 Male, age 76, both hemispheres 37.9
2053 Male, age 18, unknown 34.3
Pretectal area
nTPM: 41.6
2273 Male, age 74, both hemispheres 52.2
2224 Female, age 72, unknown 46.7
1944 Female, age 72, unknown 46.4
2007 Male, age 72, unknown 45.0
2667 Female, age 75, unknown 43.0
1816 Male, age 51, unknown 42.9
2316 Male, age 76, right hemisphere 39.2
1817 Female, age 42, unknown 38.1
1815 Male, age 53, unknown 37.3
2825 Male, age 18, unknown 36.2
2407 Male, age 75, both hemispheres 30.4
Red nucleus
nTPM: 37.4
1821 Female, age 72, unknown 46.0
1904 Male, age 53, unknown 45.3
2785 Male, age 18, unknown 40.2
1865 Male, age 51, unknown 40.1
1954 Female, age 42, unknown 39.2
2823 Male, age 76, right hemisphere 38.3
2503 Female, age 72, unknown 37.4
2769 Male, age 72, unknown 37.2
2227 Male, age 72, unknown 36.9
2725 Female, age 75, unknown 31.3
2584 Male, age 75, left hemisphere 28.8
2588 Male, age 74, left hemisphere 28.5
Substantia nigra
nTPM: 39.7
1941 Male, age 53, unknown 44.9
1916 Female, age 42, unknown 44.1
2241 Male, age 72, unknown 43.2
1889 Female, age 72, unknown 42.0
2665 Male, age 74, both hemispheres 39.1
1851 Male, age 51, unknown 38.2
2583 Male, age 75, right hemisphere 38.2
2699 Male, age 18, unknown 36.7
2590 Female, age 75, unknown 35.6
2409 Female, age 72, unknown 35.0
Superior colliculus
nTPM: 38.2
1913 Female, age 42, unknown 42.9
2668 Female, age 75, unknown 42.2
2087 Female, age 72, unknown 41.1
1995 Male, age 72, unknown 39.8
2587 Male, age 74, left hemisphere 39.4
2261 Male, age 18, unknown 37.8
1895 Male, age 76, right hemisphere 37.5
1839 Male, age 51, unknown 37.3
1796 Male, age 53, unknown 34.5
2664 Male, age 75, both hemispheres 29.2
Ventral tegmental area
nTPM: 39.7
1942 Male, age 51, unknown 43.8
1915 Female, age 42, unknown 40.2
2218 Male, age 76, both hemispheres 39.9
2223 Female, age 72, unknown 38.7
2410 Female, age 72, unknown 38.6
2021 Male, age 53, unknown 36.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 51.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 51.6
Samples: 183

Max nTPM: 115.4
Min nTPM: 27.1
Std nTPM: 13.0
Median nTPM: 50.0
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 115.4
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 105.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 89.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 82.6
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 79.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 76.9
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 76.3
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 74.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 72.6
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 71.5
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 70.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 96.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 96.7
FF:10158-103A5 76 years, female 96.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 95.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 87.4
Samples: 4

Max nTPM: 97.3
Min nTPM: 74.4
Sample A Female 97.3
Sample B Female 86.4
Sample C Male 74.4
Sample D Male 91.6
Midbrain
nTPM: 95.6
Samples: 4

Max nTPM: 125.8
Min nTPM: 84.3
Sample A Female 125.8
Sample B Female 84.5
Sample C Male 87.9
Sample D Male 84.3
Periaqueductal gray
nTPM: 88.6
Samples: 3

Max nTPM: 93.3
Min nTPM: 79.9
Sample B Female 92.7
Sample C Male 93.3
Sample D Male 79.9
Superior colliculi
nTPM: 95.6
Samples: 4

Max nTPM: 115.7
Min nTPM: 83.3
Sample A Female 99.3
Sample B Female 115.7
Sample C Male 84.1
Sample D Male 83.3

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