We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
RACGAP1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • RACGAP1
TISSUE PRIMARY DATA SALIVARY GLAND Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Salivary gland
Tissue proteome
Salivary gland
Tissue methods
SALIVARY GLAND - Expression summary
Protein expression
Salivary glandi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:4.3 nTPM
HPA:2.2 nTPM
GTEx:4.3 nTPM
FANTOM5:5.3 Scaled Tags Per Million
SALIVARY GLAND - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SALIVARY GLAND - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA043912Antibody CAB025859
Glandular cells Not detectedLow





SALIVARY GLAND - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2.2
overview
Female, age 68
Salivary gland sample 216
nTPM: 2.4
Cell types%
Glandular cells:
45

Ductal cells:
25

Adipocytes:
5

Other cell types:
25

overview
Male, age 60
Salivary gland sample 217
nTPM: 2.4
Cell types%
Glandular cells:
55

Ductal cells:
20

Adipocytes:
5

Endothelial cells:
5

Other cell types:
15

overview
Female, age 21
Salivary gland sample 218
nTPM: 1.7
Cell types%
Glandular cells:
55

Ductal cells:
15

Adipocytes:
5

Endothelial cells:
5

Other cell types:
20


SALIVARY GLAND - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

4.3
GTEx sample id Sample description nTPM
Minor Salivary Gland
Average nTPM: 4.3
Samples: 181

Max nTPM: 27.4
Min nTPM: 1.1
Std nTPM: 3.8
Median nTPM: 3.0
GTEX-1O97I-2826-SM-HPAEO 60-69 years, male 27.4
GTEX-ZAB5-2326-SM-5IJFR 50-59 years, male 20.2
GTEX-1192X-2926-SM-5N9BA 50-59 years, male 19.2
GTEX-13QBU-2126-SM-5KLZN 40-49 years, female 17.7
GTEX-11EMC-2526-SM-5PNVU 60-69 years, female 16.2
GTEX-131XH-2626-SM-5GCNP 50-59 years, male 15.2
GTEX-11ZTS-3026-SM-5EQM7 60-69 years, female 14.7
GTEX-ZLWG-2026-SM-DO11F 50-59 years, female 14.4
GTEX-12BJ1-2226-SM-5BC6G 60-69 years, male 13.5
GTEX-ZT9W-2126-SM-51MSF 50-59 years, male 13.5
GTEX-Y5LM-1826-SM-4VDT9 40-49 years, female 11.8
GTEX-1HCU7-0126-SM-C1YR3 50-59 years, male 11.7
GTEX-ZF29-2126-SM-DNZYX 60-69 years, female 11.5
GTEX-ZPU1-2326-SM-57WEP 40-49 years, male 11.3
GTEX-ZLFU-2226-SM-EXUS7 40-49 years, male 10.0
GTEX-WFJO-2026-SM-4LVM3 30-39 years, male 9.6
GTEX-ZP4G-1926-SM-57WDZ 20-29 years, female 8.7
GTEX-XV7Q-2426-SM-4BRV8 40-49 years, female 8.5
GTEX-1QCLZ-2526-SM-EXUST 60-69 years, female 8.1
GTEX-WY7C-1426-SM-4OND1 50-59 years, male 8.1
GTEX-18QFQ-0626-SM-718AW 30-39 years, male 7.9
GTEX-1R9PM-1726-SM-E76T2 20-29 years, male 7.8
GTEX-17MFQ-1626-SM-7938Z 20-29 years, male 7.5
GTEX-1CB4I-2526-SM-7MKG1 50-59 years, male 7.3
GTEX-1R9PO-2626-SM-E6CPU 60-69 years, female 7.2
GTEX-1B97J-2126-SM-79OL6 50-59 years, female 7.1
GTEX-1C6VR-0726-SM-7P8OV 60-69 years, male 7.1
GTEX-13NYC-2626-SM-5K7VN 60-69 years, male 6.3
GTEX-14E1K-2626-SM-664OJ 50-59 years, male 6.2
GTEX-1AX9K-2126-SM-72D7K 50-59 years, male 6.2
GTEX-1JN1M-2426-SM-ARU93 60-69 years, female 6.1
GTEX-1PPH8-1526-SM-E6CQO 20-29 years, male 6.1
GTEX-18A67-0626-SM-7KFSL 50-59 years, male 5.6
GTEX-1S83E-0626-SM-E9TKC 40-49 years, male 5.2
GTEX-1314G-2026-SM-5LZUM 30-39 years, male 5.1
GTEX-1C64O-0626-SM-7DHL1 60-69 years, male 5.1
GTEX-1R9K5-0626-SM-DPRZB 50-59 years, male 5.0
GTEX-WH7G-2126-SM-4M1XU 40-49 years, male 4.9
GTEX-1117F-3026-SM-5GZYU 60-69 years, female 4.8
GTEX-WHSB-2326-SM-4M1XK 50-59 years, male 4.8
GTEX-ZA64-1726-SM-5CVMF 20-29 years, male 4.7
GTEX-178AV-1426-SM-6LLID 40-49 years, male 4.5
GTEX-17KNJ-2726-SM-7KFRE 50-59 years, male 4.5
GTEX-1MCC2-2226-SM-EV7AJ 30-39 years, female 4.3
GTEX-1J1R8-1826-SM-AHZ3B 40-49 years, male 4.2
GTEX-1MGNQ-1926-SM-DTX8L 40-49 years, male 4.2
GTEX-1IY9M-2926-SM-A96TH 60-69 years, male 4.1
GTEX-15SDE-1226-SM-HAV36 50-59 years, female 4.0
GTEX-1OJC3-1026-SM-E6CQK 20-29 years, male 4.0
GTEX-YJ8A-1826-SM-GNTAB 20-29 years, male 3.9
GTEX-1KD5A-2226-SM-EV79U 50-59 years, male 3.8
GTEX-1PIEJ-0626-SM-DTX99 20-29 years, female 3.8
GTEX-1S5ZU-0926-SM-HPAEX 20-29 years, female 3.8
GTEX-YF7O-2226-SM-5CVN8 50-59 years, male 3.8
GTEX-Z9EW-1426-SM-HPAG9 40-49 years, male 3.8
GTEX-13OVK-1826-SM-6PALE 40-49 years, male 3.7
GTEX-15EU6-2626-SM-7KUN4 50-59 years, male 3.7
GTEX-1AX8Z-0626-SM-731EH 60-69 years, male 3.7
GTEX-12WSL-2126-SM-5GCNG 50-59 years, male 3.6
GTEX-15CHC-1226-SM-686ZH 60-69 years, female 3.6
GTEX-1AYD5-2726-SM-7MXVG 50-59 years, male 3.6
GTEX-1POEN-2226-SM-DPRXV 30-39 years, female 3.6
GTEX-WOFM-2126-SM-4M9R4 20-29 years, male 3.6
GTEX-Y3I4-1926-SM-4TT8L 50-59 years, male 3.6
GTEX-Y5V6-2226-SM-4VDTC 60-69 years, male 3.6
GTEX-18A7B-2826-SM-7KFTK 70-79 years, male 3.5
GTEX-1B932-0626-SM-731EM 40-49 years, female 3.5
GTEX-1GN1W-2526-SM-9JGHX 50-59 years, female 3.5
GTEX-1JKYR-0726-SM-AHZ3K 20-29 years, male 3.5
GTEX-ZXG5-2826-SM-5NQ8T 60-69 years, male 3.5
GTEX-11ZTT-2226-SM-5CVLP 60-69 years, female 3.4
GTEX-1GF9X-0226-SM-7P8SM 40-49 years, female 3.4
GTEX-1I6K7-0926-SM-A96SV 40-49 years, male 3.4
GTEX-1LKK1-2926-SM-EVR4Z 50-59 years, female 3.4
GTEX-X261-2426-SM-4PQZU 50-59 years, male 3.4
GTEX-11P81-2026-SM-5P9GT 30-39 years, female 3.3
GTEX-145ME-1626-SM-5RQI3 40-49 years, female 3.3
GTEX-14PJ3-1526-SM-664O9 50-59 years, male 3.3
GTEX-1C64N-2926-SM-79OLM 50-59 years, male 3.3
GTEX-1EH9U-2926-SM-7DHLX 60-69 years, male 3.3
GTEX-1GPI7-0326-SM-7MKH6 20-29 years, male 3.3
GTEX-1IDJD-2526-SM-C1YSA 30-39 years, male 3.3
GTEX-1QEPI-0626-SM-E76QE 60-69 years, female 3.3
GTEX-18D9U-2226-SM-7KFTN 40-49 years, male 3.2
GTEX-ZC5H-2726-SM-5KLZW 40-49 years, female 3.2
GTEX-11WQK-2926-SM-5EQKT 50-59 years, male 3.1
GTEX-13O21-1926-SM-5MR39 50-59 years, male 3.1
GTEX-1I6K6-0626-SM-ARU7J 30-39 years, male 3.1
GTEX-1JN6P-2526-SM-CNNPX 60-69 years, male 3.1
GTEX-XMK1-2626-SM-4B65R 40-49 years, male 3.1
GTEX-13111-2326-SM-5LZUQ 50-59 years, male 3.0
GTEX-13113-1526-SM-5EGHV 60-69 years, female 3.0
GTEX-1RNSC-2926-SM-EV79L 60-69 years, male 3.0
GTEX-1RQED-2926-SM-HPAFT 60-69 years, male 3.0
GTEX-111FC-2926-SM-5GZY7 60-69 years, male 2.9
GTEX-14PJN-1726-SM-69LO7 30-39 years, male 2.9
GTEX-1GMR2-2026-SM-7MKHK 50-59 years, male 2.9
GTEX-1J8EW-2826-SM-A96T9 60-69 years, female 2.9
GTEX-1QP28-2026-SM-F2I3M 50-59 years, female 2.9
GTEX-W5X1-2426-SM-HPAGA 40-49 years, female 2.9
GTEX-WYVS-2026-SM-4RGNS 40-49 years, female 2.9
GTEX-13G51-2426-SM-5LZY8 60-69 years, male 2.8
GTEX-1445S-2926-SM-5O993 60-69 years, male 2.8
GTEX-1LC47-2426-SM-DHXKK 60-69 years, male 2.8
GTEX-11P82-0926-SM-5986X 20-29 years, male 2.7
GTEX-13QJC-2326-SM-5Q5CD 60-69 years, female 2.7
GTEX-1I4MK-1326-SM-B2LWT 50-59 years, female 2.7
GTEX-1ICLY-0626-SM-GA915 50-59 years, male 2.7
GTEX-1NHNU-2226-SM-GRR2I 50-59 years, male 2.7
GTEX-1OJC4-3126-SM-EXOJK 50-59 years, female 2.7
GTEX-1P4AB-2926-SM-EXOJR 50-59 years, male 2.7
GTEX-1PDJ9-2126-SM-HPAFH 20-29 years, male 2.7
GTEX-ZG7Y-2426-SM-DO11H 50-59 years, male 2.7
GTEX-146FR-1226-SM-5MR78 60-69 years, female 2.6
GTEX-1HSGN-0626-SM-A9G2E 40-49 years, female 2.6
GTEX-1IE54-0826-SM-AHZ2Z 40-49 years, female 2.6
GTEX-1J8QM-1826-SM-A96TA 60-69 years, female 2.6
GTEX-1LH75-2726-SM-HL11E 50-59 years, female 2.6
GTEX-1QMI2-0426-SM-EWRND 60-69 years, male 2.6
GTEX-Y111-2626-SM-4TT24 50-59 years, male 2.6
GTEX-15SHV-2226-SM-6M464 60-69 years, male 2.5
GTEX-1B8SF-1826-SM-731DJ 60-69 years, male 2.5
GTEX-1HSEH-1826-SM-A96SA 60-69 years, male 2.5
GTEX-1IDJV-2326-SM-GA8ZL 60-69 years, male 2.5
GTEX-1LVAO-2626-SM-EVR4S 60-69 years, male 2.5
GTEX-1S82P-0726-SM-EVR4O 60-69 years, female 2.5
GTEX-XGQ4-2626-SM-4AT6B 50-59 years, male 2.5
GTEX-ZE7O-2926-SM-51MSG 50-59 years, female 2.5
GTEX-13VXT-1726-SM-5IFF5 20-29 years, female 2.4
GTEX-1S5VW-1026-SM-HK797 60-69 years, male 2.4
GTEX-11EQ9-2026-SM-5P9JI 30-39 years, male 2.3
GTEX-131XF-2826-SM-5EGKH 60-69 years, male 2.3
GTEX-13CF2-2426-SM-5LZYL 60-69 years, male 2.3
GTEX-1GN1V-2926-SM-9JGI3 60-69 years, male 2.3
GTEX-1GZ2Q-2526-SM-9KNVW 40-49 years, male 2.3
GTEX-1H1CY-2326-SM-9OSXW 60-69 years, female 2.3
GTEX-1HFI6-2826-SM-GA91I 40-49 years, male 2.3
GTEX-1IDJC-1626-SM-AHZ2R 50-59 years, male 2.3
GTEX-1IKJJ-2826-SM-GA8ZM 60-69 years, male 2.3
GTEX-1KANC-1326-SM-CYPT8 50-59 years, female 2.3
GTEX-1LVA9-2526-SM-EVR5H 50-59 years, male 2.3
GTEX-X5EB-1726-SM-4E3J7 40-49 years, male 2.3
GTEX-1I1HK-2526-SM-A96SM 60-69 years, male 2.2
GTEX-1LBAC-0626-SM-D3L9T 20-29 years, male 2.2
GTEX-1NSGN-0626-SM-E9J35 50-59 years, male 2.2
GTEX-ZQUD-2126-SM-51MSY 30-39 years, male 2.2
GTEX-11NV4-1926-SM-5N9D4 60-69 years, male 2.1
GTEX-13OVI-2326-SM-5KM47 60-69 years, female 2.1
GTEX-14JIY-3026-SM-6EU1R 60-69 years, male 2.1
GTEX-15RJE-2726-SM-6LPJ1 40-49 years, male 2.1
GTEX-1AMEY-1126-SM-72D79 30-39 years, female 2.1
GTEX-1B8KZ-1726-SM-73KV7 50-59 years, male 2.1
GTEX-1HGF4-2326-SM-GA91Q 60-69 years, male 2.1
GTEX-1RAZA-0626-SM-EAZ4H 20-29 years, male 2.1
GTEX-12WSN-2226-SM-5DUXT 40-49 years, male 2.0
GTEX-1339X-2326-SM-5HL5B 40-49 years, male 2.0
GTEX-13NYB-2426-SM-5IFF4 40-49 years, male 2.0
GTEX-1HFI7-2426-SM-B2LXV 50-59 years, female 2.0
GTEX-1HR9M-2526-SM-A9G3J 60-69 years, male 2.0
GTEX-1IOXB-2826-SM-AHZ32 50-59 years, male 2.0
GTEX-1LVAM-0626-SM-HPAFZ 50-59 years, female 2.0
GTEX-1QP9N-2026-SM-DPRZT 30-39 years, male 2.0
GTEX-YB5K-1726-SM-5IFIZ 40-49 years, female 2.0
GTEX-14PN4-2526-SM-686ZG 50-59 years, male 1.9
GTEX-1H4P4-2026-SM-9WPNV 50-59 years, male 1.9
GTEX-1HSMP-1926-SM-GA8Z5 70-79 years, male 1.9
GTEX-1HSMQ-0926-SM-A96SI 50-59 years, male 1.9
GTEX-1KD4Q-2526-SM-CXZKL 40-49 years, male 1.9
GTEX-1MCQQ-2226-SM-DLHC4 60-69 years, male 1.9
GTEX-X3Y1-1926-SM-4PQZO 40-49 years, male 1.9
GTEX-13JVG-2926-SM-5J2N9 60-69 years, male 1.8
GTEX-1A3MV-1726-SM-72D68 30-39 years, male 1.8
GTEX-1C4CL-2026-SM-731EB 30-39 years, male 1.8
GTEX-1LSNL-2626-SM-EV7AT 50-59 years, male 1.8
GTEX-1R9K4-0526-SM-E76P1 60-69 years, male 1.8
GTEX-X15G-2126-SM-4PQZR 50-59 years, female 1.8
GTEX-11TUW-2426-SM-5EQKB 60-69 years, male 1.7
GTEX-12WSM-1826-SM-5BC64 60-69 years, male 1.6
GTEX-13OVL-2926-SM-5IFG3 50-59 years, male 1.4
GTEX-1GTWX-2526-SM-9JGHG 60-69 years, male 1.3
GTEX-14B4R-1426-SM-5Q5CG 30-39 years, male 1.1
Show allShow less

SALIVARY GLAND - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

5.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Parotid gland
Scaled Tags Per Million: 1.8
FF:10199-103F1 23 years, male 1.8
Salivary gland
Scaled Tags Per Million: 4.1
FF:10093-102C3 16-60 years, mixed 4.1
Submaxillary gland
Scaled Tags Per Million: 5.3
FF:10202-103F4 24 years, male 5.3

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo