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  • RPL26
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1787.2 nTPM
HPA Brain:489.6 nTPM
GTEx:1787.2 nTPM
FANTOM5:90.3 Scaled Tags Per Million
Pig:249.0 nTPM
Mouse:1593.2 nTPM
Allen mouse:10.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

489.6
Sample id Sample description nTPM
Amygdala
nTPM: 489.6
2695 Female, age 67, right hemisphere 673.9
2514 Male, age 75, right hemisphere 480.8
2814 Male, age 76, right hemisphere 471.9
2517 Female, age 94, left hemisphere 420.7
1987 Female, age 91, left hemisphere 400.5
Basal amygdala
nTPM: 393.5
2827 Female, age 67, right hemisphere 541.0
2609 Male, age 75, right hemisphere 400.3
2685 Female, age 94, left hemisphere 393.0
2110 Male, age 80, left hemisphere 366.8
1955 Male, age 76, both hemispheres 336.7
2243 Female, age 91, right hemisphere 323.2
Central amygdala
nTPM: 421.9
2826 Female, age 94, left hemisphere 649.8
2515 Male, age 75, right hemisphere 400.1
1905 Male, age 76, both hemispheres 374.9
2239 Male, age 80, left hemisphere 343.1
2701 Female, age 91, right hemisphere 341.4
Corticomedial amygdala
nTPM: 362.7
2240 Male, age 76, both hemispheres 405.2
2535 Female, age 67, right hemisphere 386.1
2829 Male, age 80, left hemisphere 365.7
2428 Male, age 75, right hemisphere 349.7
2429 Female, age 94, left hemisphere 347.4
2242 Female, age 91, right hemisphere 322.2
Lateral amygdala
nTPM: 445.2
2830 Female, age 67, right hemisphere 656.0
2516 Male, age 75, right hemisphere 553.5
2534 Female, age 94, left hemisphere 487.5
2256 Male, age 80, left hemisphere 362.3
1883 Male, age 76, both hemispheres 326.3
2255 Female, age 91, right hemisphere 285.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1787.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1787.2
Samples: 181

Max nTPM: 6748.0
Min nTPM: 883.1
Std nTPM: 748.7
Median nTPM: 1673.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 6748.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 5405.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 4901.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 4156.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 3526.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 3409.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 3399.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 3363.3
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 3046.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 3033.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2927.9
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 2878.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 2696.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 2684.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 2617.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 2611.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 2609.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 2603.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 2468.0
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 2340.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 2324.5
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 2315.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 2276.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 2270.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 2240.9
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 2236.1
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 2232.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 2225.2
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 2162.9
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 2153.4
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 2141.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 2131.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 2122.8
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 2120.3
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 2119.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 2075.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 2073.6
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 2068.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 2066.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 2040.4
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 2038.3
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 2037.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 2014.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 2012.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1961.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1946.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 1938.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1937.3
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 1933.0
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 1931.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1920.9
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 1912.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1908.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1897.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1890.2
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 1889.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1879.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1872.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1864.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1861.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1860.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1857.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1851.9
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 1848.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1845.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1838.3
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 1834.0
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 1823.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1803.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1783.4
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 1770.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1770.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1769.0
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 1761.4
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 1759.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1753.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1752.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1751.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1750.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1728.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1727.8
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 1714.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1714.1
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 1710.7
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 1703.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1699.3
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 1697.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1695.6
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 1686.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1674.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1673.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1664.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1663.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1662.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1660.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1654.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1641.4
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 1629.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1622.3
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 1614.1
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 1612.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 1596.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1582.7
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 1579.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1573.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1567.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1560.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1556.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1523.2
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 1522.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1522.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1522.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1519.1
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 1517.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1509.4
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 1496.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1491.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1480.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1461.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1459.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1450.8
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 1439.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1432.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1429.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1427.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1419.7
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 1414.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1413.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1411.6
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 1411.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1398.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1393.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1373.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1370.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1367.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1354.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1348.3
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 1342.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1313.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1301.4
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 1300.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1296.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1294.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1292.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1280.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1265.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1254.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1247.2
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 1241.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1238.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 1220.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1209.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1207.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1204.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 1196.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 1174.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1166.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1165.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1144.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 1141.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 1140.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1127.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 1120.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1111.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 1105.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 1103.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 1084.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 1083.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1073.2
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 1072.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 1066.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 1046.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1019.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 1001.0
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 968.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 926.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 920.7
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 910.2
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 908.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 898.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 883.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

90.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 90.3
FF:10151-102I7 76 years, female 90.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

249.0
Pig sample Sample description nTPM
Amygdala
nTPM: 249.0
Samples: 4

Max nTPM: 330.8
Min nTPM: 127.4
Sample A Female 301.2
Sample B Female 330.8
Sample C Male 236.7
Sample D Male 127.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1593.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 1593.2
Samples: 4

Max nTPM: 1678.9
Min nTPM: 1456.4
Sample A Male 1456.4
Sample B Male 1650.5
Sample C Female 1678.9
Sample D Female 1587.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

10.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 10.4
69816792 Antisense, RP_050510_01_H06, Mouse strain C57BL/6J (56 days, male) 10.4

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