MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1716.1 nTPM
HPA Brain:456.9 nTPM
GTEx:1716.1 nTPM
FANTOM5:120.0 Scaled Tags Per Million
Pig:342.6 nTPM
Mouse:1600.8 nTPM
Allen mouse:12.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 456.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 386.9
2666 Male, age 74, left hemisphere 483.4
1870 Female, age 42, unknown 428.1
1833 Male, age 53, unknown 403.4
2411 Female, age 72, unknown 397.2
1827 Male, age 72, unknown 386.4
1830 Male, age 51, unknown 386.2
2219 Male, age 76, both hemispheres 374.4
2828 Female, age 72, unknown 361.2
2019 Male, age 18, unknown 335.9
2586 Male, age 75, left hemisphere 313.0
Dorsal raphe nucleus
nTPM: 363.8
2750 Male, age 76, both hemispheres 429.3
2298 Female, age 72, unknown 378.7
2016 Female, age 72, unknown 377.8
1828 Male, age 53, unknown 361.5
2047 Male, age 72, unknown 271.8
Inferior colliculus
nTPM: 397.1
2849 Male, age 72, unknown 449.1
1890 Male, age 53, unknown 396.4
2097 Female, age 72, unknown 379.0
1848 Female, age 42, unknown 364.0
Median raphe nucleus
nTPM: 405.5
2220 Male, age 76, midline 405.5
Periaquaductal grey, anterior
nTPM: 377.6
2502 Female, age 75, unknown 416.8
1795 Male, age 51, unknown 358.7
1947 Male, age 18, unknown 357.4
Periaquaductal grey, dorsal
nTPM: 377.4
2850 Male, age 76, both hemispheres 392.9
1840 Male, age 53, unknown 386.5
1831 Male, age 72, unknown 381.9
2464 Female, age 72, unknown 348.3
Periaquaductal grey, lateral
nTPM: 347.5
2053 Male, age 18, unknown 377.6
2140 Male, age 76, both hemispheres 346.5
2272 Male, age 74, both hemispheres 318.4
Pretectal area
nTPM: 377.1
1815 Male, age 53, unknown 445.4
1816 Male, age 51, unknown 422.5
2825 Male, age 18, unknown 421.4
1817 Female, age 42, unknown 418.4
2316 Male, age 76, right hemisphere 391.8
2224 Female, age 72, unknown 377.0
2007 Male, age 72, unknown 371.7
1944 Female, age 72, unknown 357.3
2667 Female, age 75, unknown 333.4
2407 Male, age 75, both hemispheres 315.9
2273 Male, age 74, both hemispheres 293.0
Red nucleus
nTPM: 430.9
2503 Female, age 72, unknown 533.1
1821 Female, age 72, unknown 502.0
2725 Female, age 75, unknown 493.7
1865 Male, age 51, unknown 463.2
2584 Male, age 75, left hemisphere 446.4
2588 Male, age 74, left hemisphere 410.6
2227 Male, age 72, unknown 408.3
2823 Male, age 76, right hemisphere 406.7
1904 Male, age 53, unknown 403.2
2769 Male, age 72, unknown 389.6
1954 Female, age 42, unknown 357.9
2785 Male, age 18, unknown 356.6
Substantia nigra
nTPM: 456.9
2699 Male, age 18, unknown 577.6
2665 Male, age 74, both hemispheres 541.3
2241 Male, age 72, unknown 538.3
2409 Female, age 72, unknown 524.4
1851 Male, age 51, unknown 511.9
1916 Female, age 42, unknown 413.9
1889 Female, age 72, unknown 396.6
2590 Female, age 75, unknown 387.8
1941 Male, age 53, unknown 361.5
2583 Male, age 75, right hemisphere 315.4
Superior colliculus
nTPM: 410.9
2587 Male, age 74, left hemisphere 510.1
1913 Female, age 42, unknown 488.1
1995 Male, age 72, unknown 449.7
2668 Female, age 75, unknown 413.8
1796 Male, age 53, unknown 409.0
1895 Male, age 76, right hemisphere 388.0
1839 Male, age 51, unknown 382.6
2261 Male, age 18, unknown 372.7
2087 Female, age 72, unknown 365.4
2664 Male, age 75, both hemispheres 329.6
Ventral tegmental area
nTPM: 434.4
2223 Female, age 72, unknown 537.1
1915 Female, age 42, unknown 475.0
2021 Male, age 53, unknown 437.5
2410 Female, age 72, unknown 410.7
2218 Male, age 76, both hemispheres 403.3
1942 Male, age 51, unknown 342.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1716.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1716.1
Samples: 183

Max nTPM: 4462.6
Min nTPM: 642.5
Std nTPM: 605.2
Median nTPM: 1621.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 4462.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 4393.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 3829.0
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 3107.2
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 3054.4
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 2943.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2932.4
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 2914.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 2899.3
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 2806.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 2768.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 120.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 120.0
FF:10158-103A5 76 years, female 120.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 342.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 318.8
Samples: 4

Max nTPM: 381.3
Min nTPM: 230.4
Sample A Female 380.4
Sample B Female 381.3
Sample C Male 282.9
Sample D Male 230.4
Midbrain
nTPM: 306.9
Samples: 4

Max nTPM: 385.7
Min nTPM: 233.5
Sample A Female 363.5
Sample B Female 385.7
Sample C Male 244.8
Sample D Male 233.5
Periaqueductal gray
nTPM: 257.1
Samples: 3

Max nTPM: 285.9
Min nTPM: 234.1
Sample B Female 285.9
Sample C Male 251.2
Sample D Male 234.1
Superior colliculi
nTPM: 342.6
Samples: 4

Max nTPM: 420.1
Min nTPM: 289.3
Sample A Female 353.9
Sample B Female 420.1
Sample C Male 307.2
Sample D Male 289.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 1600.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 1600.8
Samples: 4

Max nTPM: 1667.6
Min nTPM: 1544.0
Sample A Male 1667.6
Sample B Male 1588.3
Sample C Female 1544.0
Sample D Female 1603.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 12.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.1
69816792 Antisense, RP_050510_01_H06, Mouse strain C57BL/6J (56 days, male) 12.1

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