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  • PAQR4
TISSUE SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE
MIDBRAIN OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
Tissue methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:144.1 nTPM
HPA Brain:91.0 nTPM
GTEx:144.1 nTPM
FANTOM5:58.7 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

91.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 79.3
2816 Male, age 47, midline 92.6
1981 Female, age 72, midline 86.5
2194 Female, age 79, both hemispheres 82.9
2048 Male, age 55, midline 67.9
2565 Male, age 75, midline 66.8
Cervical spinal cord, dorsal horn
nTPM: 81.3
2296 Male, age 66, both hemispheres 146.5
2173 Female, age 72, unknown 111.8
2069 Male, age 47, both hemispheres 75.2
1877 Male, age 55, unknown 68.5
2721 Male, age 90, both hemispheres 45.5
2297 Male, age 75, both hemispheres 40.5
Cervical spinal cord, ventral horn
nTPM: 91.0
2098 Female, age 72, unknown 102.1
2068 Male, age 55, unknown 97.4
2820 Female, age 79, both hemispheres 97.2
2480 Male, age 75, both hemispheres 88.1
2809 Male, age 90, both hemispheres 81.5
2295 Male, age 66, both hemispheres 79.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

144.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 144.1
Samples: 204

Max nTPM: 299.2
Min nTPM: 27.8
Std nTPM: 54.1
Median nTPM: 137.7
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 299.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 281.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 276.1
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 267.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 265.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 265.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 257.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 255.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 246.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 242.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 242.2
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 242.2
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 240.6
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 240.5
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 238.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 234.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 233.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 216.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 216.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 215.2
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 214.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 212.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 212.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 210.3
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 207.8
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 202.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 201.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 201.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 201.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 200.0
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 199.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 198.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 198.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 196.7
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 194.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 194.1
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 192.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 191.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 189.5
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 187.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 187.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 187.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 186.9
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 185.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 184.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 183.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 182.9
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 182.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 182.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 180.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 180.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 179.1
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 178.8
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 178.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 177.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 176.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 176.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 175.9
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 175.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 175.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 174.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 173.9
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 172.6
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 171.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 169.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 169.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 168.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 168.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 166.6
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 166.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 164.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 164.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 163.9
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 162.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 160.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 159.5
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 159.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 158.4
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 157.6
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 156.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 156.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 156.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 155.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 155.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 154.8
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 153.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 151.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 150.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 150.4
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 150.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 149.7
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 149.2
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 147.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 146.9
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 146.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 142.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 140.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 140.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 140.6
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 140.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 139.0
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 138.2
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 137.3
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 135.6
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 134.6
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 134.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 133.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 132.8
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 132.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 132.4
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 132.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 131.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 131.4
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 130.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 129.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 129.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 129.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 128.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 128.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 128.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 127.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 126.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 126.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 125.9
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 125.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 125.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 125.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 124.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 124.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 124.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 123.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 123.2
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 122.3
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 122.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 121.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 119.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 118.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 117.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 117.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 116.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 115.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 115.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 114.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 114.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 112.4
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 112.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 111.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 110.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 109.9
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 108.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 107.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 105.4
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 102.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 101.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 101.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 100.7
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 100.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 100.3
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 98.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 94.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 93.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 92.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 92.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 92.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 89.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 88.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 88.4
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 88.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 88.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 87.8
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 87.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 86.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 86.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 85.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 85.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 84.5
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 83.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 83.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 82.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 82.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 78.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 77.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 76.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 75.7
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 74.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 74.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 74.1
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 73.5
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 71.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 71.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 68.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 67.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 62.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 62.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 61.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 61.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 57.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 55.8
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 55.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 53.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 50.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 47.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 35.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 27.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

58.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 58.7
FF:10181-103D1 60 years, female 70.6
FF:10159-103A6 76 years, female 46.7

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