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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.4
nTPM
Monaco:
23.1
nTPM
Schmiedel:
27.5
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.4
HPA sample
nTPM
gdT-cell nTPM: 5.2
Samples: 6
Max nTPM: 6.7
Min nTPM: 3.1
P10809_1007
5.3
P10809_1022
6.7
P10809_1041
6.7
P10809_1060
4.5
P10809_1077
5.0
P10809_1098
3.1
MAIT T-cell nTPM: 5.4
Samples: 6
Max nTPM: 7.8
Min nTPM: 3.2
P10809_1006
6.4
P10809_1024
7.0
P10809_1043
7.8
P10809_1062
3.8
P10809_1083
3.9
P10809_1097
3.2
Memory CD4 T-cell nTPM: 3.4
Samples: 6
Max nTPM: 4.0
Min nTPM: 2.3
P10809_1014
4.0
P10809_1026
2.3
P10809_1045
3.6
P10809_1064
3.5
P10809_1086
3.0
P10809_1113
3.7
Memory CD8 T-cell nTPM: 3.8
Samples: 5
Max nTPM: 4.9
Min nTPM: 2.1
P10809_1012
4.9
P10809_1027
3.5
P10809_1046
4.4
P10809_1065
2.1
P10809_1111
4.1
Naive CD4 T-cell nTPM: 4.6
Samples: 6
Max nTPM: 6.4
Min nTPM: 2.3
P10809_1015
4.9
P10809_1030
6.4
P10809_1049
3.7
P10809_1068
4.9
P10809_1085
2.3
P10809_1112
5.2
Naive CD8 T-cell nTPM: 5.1
Samples: 6
Max nTPM: 7.9
Min nTPM: 3.1
P10809_1016
3.8
P10809_1031
7.9
P10809_1050
6.8
P10809_1069
3.1
P10809_1087
4.1
P10809_1110
4.6
T-reg nTPM: 5.5
Samples: 6
Max nTPM: 8.2
Min nTPM: 0.8
P10809_1018
4.2
P10809_1037
8.2
P10809_1056
8.1
P10809_1075
6.1
P10809_1094
5.3
P10809_1106
0.8
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.1
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 14.6
Samples: 4
Max nTPM: 19.4
Min nTPM: 12.7
RHH5202_R3573
12.7
RHH5230_R3602
13.1
RHH5259_R3631
19.4
RHH5288_R3660
13.2
Effector memory CD8 T-cell nTPM: 13.5
Samples: 4
Max nTPM: 16.0
Min nTPM: 10.7
RHH5203_R3574
14.2
RHH5231_R3603
10.7
RHH5260_R3632
13.0
RHH5289_R3661
16.0
MAIT T-cell nTPM: 18.1
Samples: 4
Max nTPM: 23.5
Min nTPM: 12.6
RHH5233_R3605
23.5
RHH5205_R3576
19.8
RHH5262_R3634
16.4
RHH5297_R3663
12.6
Memory CD4 T-cell TFH nTPM: 10.5
Samples: 4
Max nTPM: 18.2
Min nTPM: 4.4
RHH5300_R3666
8.6
RHH5236_R3608
10.8
RHH5265_R3637
18.2
RHH5208_R3579
4.4
Memory CD4 T-cell Th1 nTPM: 14.4
Samples: 4
Max nTPM: 22.3
Min nTPM: 8.3
RHH5210_R3581
8.3
RHH5302_R3668
12.7
RHH5238_R3610
22.3
RHH5267_R3639
14.3
Memory CD4 T-cell Th1/Th17 nTPM: 11.4
Samples: 4
Max nTPM: 11.8
Min nTPM: 11.2
RHH5303_R3669
11.2
RHH5211_R3582
11.2
RHH5239_R3611
11.8
RHH5268_R3640
11.3
Memory CD4 T-cell Th17 nTPM: 11.8
Samples: 4
Max nTPM: 14.1
Min nTPM: 10.8
RHH5304_R3670
14.1
RHH5212_R3583
10.8
RHH5240_R3612
11.0
RHH5269_R3641
11.2
Memory CD4 T-cell Th2 nTPM: 13.7
Samples: 4
Max nTPM: 17.6
Min nTPM: 8.8
RHH5305_R3671
15.4
RHH5213_R3584
13.1
RHH5241_R3613
17.6
RHH5270_R3642
8.8
Naive CD4 T-cell nTPM: 14.1
Samples: 4
Max nTPM: 15.7
Min nTPM: 12.8
RHH5306_R3672
15.7
RHH5214_R3585
12.8
RHH5242_R3614
15.0
RHH5271_R3643
12.9
Naive CD8 T-cell nTPM: 14.4
Samples: 4
Max nTPM: 19.7
Min nTPM: 9.7
RHH5201_R3572
16.0
RHH5229_R3601
9.7
RHH5258_R3630
19.7
RHH5287_R3659
12.3
Non-Vd2 gdTCR nTPM: 15.4
Samples: 4
Max nTPM: 22.4
Min nTPM: 11.5
RHH5235_R3607
15.1
RHH5264_R3636
11.5
RHH5207_R3578
12.4
RHH5299_R3665
22.4
T-reg nTPM: 13.3
Samples: 4
Max nTPM: 22.7
Min nTPM: 6.4
RHH5301_R3667
9.7
RHH5237_R3609
14.3
RHH5266_R3638
6.4
RHH5209_R3580
22.7
Terminal effector memory CD4 T-cell nTPM: 12.3
Samples: 2
Max nTPM: 15.7
Min nTPM: 8.9
RHH5243_R3615
8.9
RHH5272_R3644
15.7
Terminal effector memory CD8 T-cell nTPM: 23.1
Samples: 4
Max nTPM: 37.8
Min nTPM: 10.7
RHH5232_R3604
37.8
RHH5204_R3575
10.7
RHH5261_R3633
17.6
RHH5296_R3662
26.4
Vd2 gdTCR nTPM: 19.2
Samples: 4
Max nTPM: 33.7
Min nTPM: 12.3
RHH5234_R3606
18.5
RHH5206_R3577
33.7
RHH5263_R3635
12.3
RHH5298_R3664
12.4
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
