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  • SCNM1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:33.3 nTPM
HPA Brain:18.4 nTPM
GTEx:33.3 nTPM
FANTOM5:37.0 Scaled Tags Per Million
Pig:26.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

18.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 17.4
1981 Female, age 72, midline 20.5
2048 Male, age 55, midline 18.7
2194 Female, age 79, both hemispheres 16.9
2816 Male, age 47, midline 16.5
2565 Male, age 75, midline 14.4
Cervical spinal cord, dorsal horn
nTPM: 18.4
2173 Female, age 72, unknown 20.4
2297 Male, age 75, both hemispheres 19.1
2296 Male, age 66, both hemispheres 18.9
1877 Male, age 55, unknown 18.6
2721 Male, age 90, both hemispheres 17.0
2069 Male, age 47, both hemispheres 16.5
Cervical spinal cord, ventral horn
nTPM: 16.8
2098 Female, age 72, unknown 20.9
2809 Male, age 90, both hemispheres 18.7
2295 Male, age 66, both hemispheres 16.3
2480 Male, age 75, both hemispheres 15.4
2068 Male, age 55, unknown 15.1
2820 Female, age 79, both hemispheres 14.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

33.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 33.3
Samples: 204

Max nTPM: 58.4
Min nTPM: 18.5
Std nTPM: 7.5
Median nTPM: 32.8
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 58.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 58.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 56.7
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 54.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 50.3
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 50.1
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 50.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 48.5
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 48.5
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 48.4
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 47.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 47.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 46.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 46.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 46.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 45.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 45.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 44.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 44.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 43.6
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 43.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 42.9
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 42.7
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 42.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 41.8
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 41.6
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 40.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 40.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 40.1
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 40.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 40.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 39.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 39.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 39.8
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 39.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 39.5
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 39.3
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 39.2
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 39.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 39.0
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 38.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 38.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 38.8
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 38.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 38.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 38.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 38.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 38.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 37.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 37.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 37.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 37.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 37.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 37.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 37.0
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 36.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 36.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 36.5
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 36.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 36.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 36.2
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 36.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 36.0
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 36.0
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 35.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 35.8
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 35.7
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 35.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 35.6
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 35.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 35.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 35.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 34.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 34.9
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 34.8
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 34.6
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 34.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 34.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 34.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 34.2
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 34.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 34.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 34.0
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 34.0
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 33.9
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 33.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 33.7
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 33.7
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 33.6
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 33.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 33.5
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 33.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 33.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 33.2
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 33.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 33.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 33.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 33.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 33.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 33.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 33.0
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 32.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 32.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 32.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 32.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 32.5
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 32.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 32.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 32.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 32.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 32.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 32.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 32.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 32.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 31.9
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 31.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 31.7
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 31.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 31.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 31.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 31.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 31.1
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 31.0
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 30.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 30.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 30.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 30.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 30.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 30.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 30.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 30.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 30.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 30.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 30.0
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 30.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 29.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 29.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 29.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 29.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 29.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 29.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 29.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 29.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 29.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 28.9
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 28.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 28.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 28.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 28.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 28.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 28.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 28.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 28.3
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 28.3
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 28.2
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 28.1
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 28.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 28.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 27.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 27.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 27.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 27.5
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 27.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 26.8
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 26.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 26.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 26.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 26.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 26.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 26.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 26.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 26.3
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 26.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 26.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 26.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 26.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 25.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 25.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 25.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 24.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 24.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 24.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 24.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 24.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 24.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 23.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 23.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 23.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 23.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 23.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 23.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 23.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 22.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 22.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 21.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 21.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 21.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 21.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 19.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 19.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 19.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 19.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 18.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 18.5
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

37.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 37.0
FF:10159-103A6 76 years, female 44.6
FF:10181-103D1 60 years, female 29.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

26.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 26.3
Samples: 4

Max nTPM: 26.6
Min nTPM: 25.8
Sample A Female 26.3
Sample B Female 25.8
Sample C Male 26.5
Sample D Male 26.6
Ventral spinal cord
nTPM: 25.6
Samples: 4

Max nTPM: 29.6
Min nTPM: 23.3
Sample A Female 23.3
Sample B Female 25.8
Sample C Male 29.6
Sample D Male 23.6

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