MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.9 nTPM
HPA Brain:19.9 nTPM
GTEx:10.9 nTPM
FANTOM5:19.5 Scaled Tags Per Million
Pig:20.7 nTPM
Mouse:33.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 19.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.8
2219 Male, age 76, both hemispheres 22.0
2019 Male, age 18, unknown 20.6
1870 Female, age 42, unknown 19.8
2411 Female, age 72, unknown 18.1
1827 Male, age 72, unknown 17.5
1830 Male, age 51, unknown 17.5
1833 Male, age 53, unknown 17.5
2666 Male, age 74, left hemisphere 15.9
2828 Female, age 72, unknown 15.6
2586 Male, age 75, left hemisphere 14.1
Dorsal raphe nucleus
nTPM: 18.6
2047 Male, age 72, unknown 20.7
2298 Female, age 72, unknown 18.5
2016 Female, age 72, unknown 18.2
1828 Male, age 53, unknown 17.8
2750 Male, age 76, both hemispheres 17.7
Inferior colliculus
nTPM: 19.9
2097 Female, age 72, unknown 22.7
1848 Female, age 42, unknown 19.7
1890 Male, age 53, unknown 19.1
2849 Male, age 72, unknown 18.2
Median raphe nucleus
nTPM: 18.0
2220 Male, age 76, midline 18.0
Periaquaductal grey, anterior
nTPM: 17.6
1947 Male, age 18, unknown 19.5
2502 Female, age 75, unknown 18.5
1795 Male, age 51, unknown 14.6
Periaquaductal grey, dorsal
nTPM: 17.9
1840 Male, age 53, unknown 19.0
2464 Female, age 72, unknown 18.7
1831 Male, age 72, unknown 17.1
2850 Male, age 76, both hemispheres 16.9
Periaquaductal grey, lateral
nTPM: 15.4
2053 Male, age 18, unknown 16.5
2272 Male, age 74, both hemispheres 15.4
2140 Male, age 76, both hemispheres 14.3
Pretectal area
nTPM: 18.0
1817 Female, age 42, unknown 20.5
1944 Female, age 72, unknown 20.1
1816 Male, age 51, unknown 19.5
2007 Male, age 72, unknown 18.9
2667 Female, age 75, unknown 18.8
2273 Male, age 74, both hemispheres 18.3
2224 Female, age 72, unknown 18.0
1815 Male, age 53, unknown 17.5
2407 Male, age 75, both hemispheres 16.5
2316 Male, age 76, right hemisphere 15.9
2825 Male, age 18, unknown 14.5
Red nucleus
nTPM: 17.3
1821 Female, age 72, unknown 21.5
1954 Female, age 42, unknown 19.6
2503 Female, age 72, unknown 19.0
1865 Male, age 51, unknown 18.3
2725 Female, age 75, unknown 17.5
1904 Male, age 53, unknown 17.0
2785 Male, age 18, unknown 17.0
2584 Male, age 75, left hemisphere 16.4
2823 Male, age 76, right hemisphere 15.8
2769 Male, age 72, unknown 15.6
2227 Male, age 72, unknown 15.4
2588 Male, age 74, left hemisphere 14.0
Substantia nigra
nTPM: 18.7
2241 Male, age 72, unknown 22.9
1941 Male, age 53, unknown 21.1
1889 Female, age 72, unknown 20.6
1916 Female, age 42, unknown 20.1
1851 Male, age 51, unknown 19.2
2665 Male, age 74, both hemispheres 17.5
2699 Male, age 18, unknown 17.3
2583 Male, age 75, right hemisphere 16.9
2409 Female, age 72, unknown 16.7
2590 Female, age 75, unknown 15.3
Superior colliculus
nTPM: 17.5
2668 Female, age 75, unknown 18.7
1895 Male, age 76, right hemisphere 18.2
2087 Female, age 72, unknown 18.2
1839 Male, age 51, unknown 17.5
1796 Male, age 53, unknown 17.4
1913 Female, age 42, unknown 17.2
1995 Male, age 72, unknown 17.0
2664 Male, age 75, both hemispheres 17.0
2261 Male, age 18, unknown 16.8
2587 Male, age 74, left hemisphere 16.5
Ventral tegmental area
nTPM: 17.6
2410 Female, age 72, unknown 19.4
2218 Male, age 76, both hemispheres 17.8
1942 Male, age 51, unknown 17.7
2223 Female, age 72, unknown 17.3
1915 Female, age 42, unknown 16.7
2021 Male, age 53, unknown 16.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 10.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.9
Samples: 183

Max nTPM: 24.1
Min nTPM: 6.5
Std nTPM: 2.3
Median nTPM: 10.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 24.1
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 21.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 18.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 16.2
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 15.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 15.7
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 15.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 14.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 14.6
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 14.5
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 14.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 19.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 19.5
FF:10158-103A5 76 years, female 19.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 20.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 19.2
Samples: 4

Max nTPM: 21.6
Min nTPM: 17.2
Sample A Female 21.6
Sample B Female 17.2
Sample C Male 17.5
Sample D Male 20.4
Midbrain
nTPM: 20.7
Samples: 4

Max nTPM: 23.6
Min nTPM: 18.2
Sample A Female 23.6
Sample B Female 21.4
Sample C Male 19.6
Sample D Male 18.2
Periaqueductal gray
nTPM: 17.7
Samples: 3

Max nTPM: 18.5
Min nTPM: 16.9
Sample B Female 18.5
Sample C Male 16.9
Sample D Male 17.8
Superior colliculi
nTPM: 18.7
Samples: 4

Max nTPM: 21.3
Min nTPM: 15.4
Sample A Female 19.8
Sample B Female 15.4
Sample C Male 21.3
Sample D Male 18.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 33.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.7
Samples: 4

Max nTPM: 34.7
Min nTPM: 32.6
Sample A Male 32.9
Sample B Male 34.6
Sample C Female 34.7
Sample D Female 32.6

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