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  • PBXIP1
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:115.9 nTPM
HPA Brain:164.6 nTPM
GTEx:115.9 nTPM
FANTOM5:108.3 Scaled Tags Per Million
Pig:39.7 nTPM
Mouse:37.2 nTPM
Allen mouse:0.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

164.6
Sample id Sample description nTPM
Amygdala
nTPM: 164.6
2695 Female, age 67, right hemisphere 251.0
2814 Male, age 76, right hemisphere 153.6
1987 Female, age 91, left hemisphere 150.7
2514 Male, age 75, right hemisphere 142.6
2517 Female, age 94, left hemisphere 125.2
Basal amygdala
nTPM: 122.4
2609 Male, age 75, right hemisphere 198.1
2243 Female, age 91, right hemisphere 131.3
1955 Male, age 76, both hemispheres 120.4
2110 Male, age 80, left hemisphere 112.0
2685 Female, age 94, left hemisphere 96.6
2827 Female, age 67, right hemisphere 75.9
Central amygdala
nTPM: 141.1
2515 Male, age 75, right hemisphere 172.4
1905 Male, age 76, both hemispheres 164.0
2239 Male, age 80, left hemisphere 128.5
2701 Female, age 91, right hemisphere 127.2
2826 Female, age 94, left hemisphere 113.5
Corticomedial amygdala
nTPM: 117.6
2428 Male, age 75, right hemisphere 165.5
2829 Male, age 80, left hemisphere 133.1
2242 Female, age 91, right hemisphere 132.3
2240 Male, age 76, both hemispheres 104.2
2429 Female, age 94, left hemisphere 95.1
2535 Female, age 67, right hemisphere 75.4
Lateral amygdala
nTPM: 127.7
2516 Male, age 75, right hemisphere 176.8
1883 Male, age 76, both hemispheres 140.9
2255 Female, age 91, right hemisphere 137.6
2256 Male, age 80, left hemisphere 122.7
2830 Female, age 67, right hemisphere 102.3
2534 Female, age 94, left hemisphere 85.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

115.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 115.9
Samples: 181

Max nTPM: 428.7
Min nTPM: 14.7
Std nTPM: 57.3
Median nTPM: 104.9
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 428.7
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 332.3
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 260.8
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 253.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 244.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 236.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 234.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 232.1
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 227.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 222.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 219.4
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 213.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 211.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 210.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 208.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 207.3
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 195.6
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 191.0
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 189.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 185.4
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 182.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 177.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 176.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 170.3
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 170.2
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 167.6
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 166.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 166.2
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 165.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 164.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 164.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 163.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 162.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 159.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 158.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 152.7
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 151.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 150.5
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 147.4
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 146.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 145.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 143.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 143.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 140.4
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 140.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 139.5
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 139.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 139.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 138.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 138.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 137.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 137.1
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 134.9
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 134.8
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 134.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 134.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 133.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 133.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 132.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 131.7
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 131.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 131.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 130.4
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 130.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 127.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 125.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 125.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 123.9
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 122.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 118.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 116.9
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 115.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 114.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 113.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 111.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 111.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 111.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 110.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 110.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 110.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 110.5
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 110.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 108.6
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 108.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 107.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 106.6
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 106.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 106.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 106.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 105.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 104.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 104.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 103.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 102.4
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 101.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 101.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 99.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 99.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 95.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 95.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 95.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 95.2
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 94.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 93.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 93.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 93.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 92.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 92.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 92.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 91.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 91.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 90.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 90.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 90.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 90.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 89.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 89.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 89.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 88.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 87.7
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 87.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 86.4
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 85.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 85.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 85.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 84.7
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 84.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 83.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 82.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 82.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 81.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 81.7
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 81.6
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 80.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 78.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 78.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 77.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 77.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 76.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 76.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 75.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 73.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 73.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 72.7
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 70.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 70.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 69.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 69.3
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 68.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 67.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 66.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 66.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 65.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 64.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 64.0
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 63.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 63.4
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 62.3
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 61.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 60.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 59.7
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 59.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 58.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 57.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 56.9
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 56.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 55.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 54.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 49.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 48.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 47.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 46.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 45.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 45.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 42.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 42.7
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 34.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 31.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 31.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 17.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 14.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

108.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 108.3
FF:10151-102I7 76 years, female 108.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

39.7
Pig sample Sample description nTPM
Amygdala
nTPM: 39.7
Samples: 4

Max nTPM: 42.2
Min nTPM: 38.7
Sample A Female 42.2
Sample B Female 38.7
Sample C Male 39.0
Sample D Male 38.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

37.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 37.3
Samples: 4

Max nTPM: 39.6
Min nTPM: 33.4
Sample A Male 33.4
Sample B Male 38.6
Sample C Female 37.4
Sample D Female 39.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.5
532728 Antisense, RP_040825_01_H01, Mouse strain C57BL/6J (56 days, male) 0.9
70919633 Antisense, RP_050713_01_G03, Mouse strain C57BL/6J (56 days, male) 0.2

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