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  • TISSUE

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  • PBXIP1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:174.7 nTPM
FANTOM5:130.3 Scaled Tags Per Million
Pig:37.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA006949
Glial cells Medium
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

174.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 174.7
Samples: 300

Max nTPM: 518.6
Min nTPM: 24.2
Std nTPM: 82.6
Median nTPM: 158.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 518.6
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 471.9
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 443.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 398.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 392.2
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 370.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 365.7
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 363.0
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 363.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 351.5
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 347.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 336.4
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 336.1
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 335.8
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 333.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 330.7
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 321.9
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 318.5
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 315.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 315.2
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 308.1
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 307.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 305.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 302.9
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 298.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 297.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 297.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 296.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 291.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 291.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 287.8
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 287.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 279.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 276.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 274.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 268.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 267.7
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 266.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 264.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 264.7
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 263.4
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 263.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 257.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 255.1
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 253.4
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 253.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 252.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 252.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 250.5
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 250.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 249.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 249.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 247.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 247.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 246.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 243.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 242.1
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 241.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 239.6
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 238.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 235.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 235.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 235.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 235.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 234.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 233.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 233.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 232.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 232.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 230.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 230.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 230.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 228.6
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 228.4
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 228.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 228.3
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 228.3
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 227.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 226.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 224.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 223.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 223.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 222.6
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 220.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 217.2
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 213.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 212.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 212.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 210.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 209.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 206.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 205.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 203.9
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 202.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 201.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 201.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 201.0
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 200.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 200.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 199.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 199.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 199.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 196.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 196.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 196.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 195.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 194.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 194.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 193.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 193.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 192.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 190.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 189.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 187.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 186.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 185.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 184.9
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 184.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 183.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 183.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 182.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 181.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 181.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 180.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 180.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 180.5
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 180.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 179.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 177.6
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 176.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 176.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 176.3
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 174.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 174.6
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 173.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 172.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 171.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 170.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 168.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 167.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 166.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 164.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 161.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 160.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 159.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 159.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 159.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 159.5
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 159.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 159.3
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 158.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 158.3
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 158.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 158.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 158.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 157.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 157.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 156.8
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 156.6
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 156.6
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 155.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 154.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 154.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 154.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 152.0
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 151.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 151.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 151.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 150.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 149.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 148.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 148.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 145.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 145.2
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 144.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 144.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 144.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 144.1
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 143.5
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 143.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 142.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 142.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 141.9
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 141.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 141.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 140.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 140.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 138.7
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 136.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 135.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 135.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 135.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 134.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 134.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 133.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 133.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 132.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 132.5
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 131.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 130.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 129.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 129.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 128.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 128.1
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 127.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 127.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 126.2
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 126.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 126.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 125.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 125.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 125.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 124.0
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 122.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 122.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 122.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 121.0
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 120.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 120.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 119.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 119.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 119.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 118.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 118.4
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 117.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 116.9
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 114.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 114.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 113.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 112.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 112.6
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 112.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 110.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 110.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 107.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 107.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 106.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 104.6
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 104.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 103.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 103.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 103.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 103.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 102.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 101.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 101.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 101.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 101.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 101.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 101.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 99.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 99.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 98.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 98.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 98.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 96.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 96.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 92.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 92.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 91.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 90.2
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 90.0
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 88.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 87.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 85.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 85.4
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 84.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 82.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 81.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 80.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 79.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 78.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 75.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 74.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 74.2
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 74.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 73.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 72.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 71.8
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 71.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 71.3
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 67.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 60.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 59.7
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 59.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 57.7
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 55.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 55.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 51.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 50.9
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 50.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 50.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 47.7
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 41.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 37.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 35.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 32.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 31.5
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 25.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 24.2
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

130.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 130.3
FF:10164-103B2 76 years, female 130.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

37.8
Pig sample Sample description nTPM
Caudate
nTPM: 37.8
Samples: 4

Max nTPM: 48.1
Min nTPM: 30.5
Sample A Female 30.5
Sample B Female 48.1
Sample C Male 40.6
Sample D Male 32.1

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