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  • ATP1A1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:131.4 nTPM
HPA Brain:244.2 nTPM
GTEx:131.4 nTPM
FANTOM5:118.5 Scaled Tags Per Million
Pig:282.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

244.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 185.4
2565 Male, age 75, midline 248.6
1981 Female, age 72, midline 195.4
2816 Male, age 47, midline 169.1
2194 Female, age 79, both hemispheres 165.0
2048 Male, age 55, midline 149.0
Cervical spinal cord, dorsal horn
nTPM: 244.2
2296 Male, age 66, both hemispheres 276.2
2297 Male, age 75, both hemispheres 267.5
2069 Male, age 47, both hemispheres 261.2
1877 Male, age 55, unknown 237.9
2173 Female, age 72, unknown 236.2
2721 Male, age 90, both hemispheres 186.4
Cervical spinal cord, ventral horn
nTPM: 203.3
2480 Male, age 75, both hemispheres 273.2
2809 Male, age 90, both hemispheres 218.8
2098 Female, age 72, unknown 202.4
2295 Male, age 66, both hemispheres 183.3
2068 Male, age 55, unknown 175.9
2820 Female, age 79, both hemispheres 166.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

131.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 131.4
Samples: 204

Max nTPM: 304.0
Min nTPM: 56.0
Std nTPM: 33.8
Median nTPM: 126.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 304.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 294.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 259.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 237.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 229.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 218.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 210.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 210.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 190.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 189.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 182.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 180.8
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 178.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 178.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 177.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 172.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 171.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 171.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 169.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 166.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 165.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 165.1
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 164.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 163.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 161.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 158.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 157.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 157.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 157.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 157.0
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 156.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 155.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 155.0
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 155.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 154.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 153.7
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 152.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 151.7
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 151.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 150.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 150.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 150.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 150.1
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 149.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 148.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 148.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 148.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 148.5
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 148.2
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 147.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 147.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 146.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 145.3
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 144.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 142.5
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 141.9
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 141.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 141.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 141.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 141.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 141.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 140.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 140.5
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 139.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 138.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 138.3
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 138.3
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 138.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 137.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 136.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 136.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 136.1
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 135.9
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 135.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 134.8
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 134.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 134.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 133.9
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 133.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 133.2
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 132.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 132.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 131.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 130.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 130.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 130.2
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 130.2
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 130.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 130.1
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 129.5
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 129.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 129.3
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 129.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 128.9
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 128.1
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 128.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 127.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 127.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 127.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 126.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 126.8
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 126.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 126.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 126.2
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 125.7
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 125.3
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 125.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 125.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 125.2
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 125.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 124.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 124.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 124.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 124.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 123.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 123.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 123.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 122.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 122.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 122.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 122.4
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 121.8
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 121.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 121.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 121.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 121.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 120.9
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 120.5
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 119.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 119.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 119.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 119.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 118.2
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 117.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 117.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 116.5
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 116.3
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 116.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 116.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 116.1
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 115.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 115.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 115.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 114.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 114.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 114.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 114.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 114.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 114.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 114.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 112.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 112.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 112.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 111.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 110.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 110.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 110.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 109.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 109.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 108.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 107.9
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 107.4
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 107.1
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 106.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 106.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 106.0
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 105.5
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 105.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 104.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 102.9
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 102.2
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 102.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 101.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 101.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 101.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 101.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 101.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 100.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 99.8
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 99.8
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 99.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 98.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 98.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 96.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 95.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 94.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 94.2
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 93.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 93.2
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 92.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 92.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 90.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 90.2
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 90.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 89.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 88.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 85.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 83.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 81.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 79.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 79.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 77.5
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 65.7
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 56.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

118.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 118.5
FF:10159-103A6 76 years, female 124.7
FF:10181-103D1 60 years, female 112.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

282.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 212.4
Samples: 4

Max nTPM: 285.1
Min nTPM: 163.7
Sample A Female 285.1
Sample B Female 165.3
Sample C Male 163.7
Sample D Male 235.3
Ventral spinal cord
nTPM: 282.2
Samples: 4

Max nTPM: 325.5
Min nTPM: 227.2
Sample A Female 325.5
Sample B Female 286.2
Sample C Male 290.0
Sample D Male 227.2

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